miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>38671_ppc-mir-2240a-2:mirbase
          Length = 97

 Score =  184 bits (93), Expect = 8e-48
 Identities = 93/93 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  gctactcgcaacgtcccttatcttctgaaatccaggtttcgatcactaattggtgtgatc 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  gctactcgcaacgtcccttatcttctgaaatccaggtttcgatcactaattggtgtgatc 60

                                           
Query: 61 accgggattctcagtggattagggcatcgagtc 93
          |||||||||||||||||||||||||||||||||
Sbjct: 61 accgggattctcagtggattagggcatcgagtc 93




>38673_ppc-mir-2240c:mirbase
          Length = 115

 Score =  139 bits (70), Expect = 4e-34
 Identities = 88/94 (93%)
 Strand = Plus / Plus

                                                                       
Query: 4   actcgcaacgtcccttatcttctgaaatccaggtttcgatcactaattggtgtgatcacc 63
           |||||| ||||||||||||||||||||||   ||||||||||||||||||||||||| | 
Sbjct: 14  actcgctacgtcccttatcttctgaaatctctgtttcgatcactaattggtgtgatccca 73

                                             
Query: 64  gggattctcagtggattagggcatcgagtcagct 97
           ||||||||||||||||||||||||||||||||||
Sbjct: 74  gggattctcagtggattagggcatcgagtcagct 107




>38672_ppc-mir-2240b:mirbase
          Length = 90

 Score =  123 bits (62), Expect = 2e-29
 Identities = 83/90 (92%)
 Strand = Plus / Plus

                                                                      
Query: 3  tactcgcaacgtcccttatcttctgaaatccaggtttcgatcactaattggtgtgatcac 62
          ||||||||||||||||||||||||||||||   |||||||||||||||||| |||||| |
Sbjct: 1  tactcgcaacgtcccttatcttctgaaatctctgtttcgatcactaattggagtgatccc 60

                                        
Query: 63 cgggattctcagtggattagggcatcgagt 92
           |||||||||||| ||||||||||||||||
Sbjct: 61 agggattctcagtagattagggcatcgagt 90




>38693_ppc-mir-2251:mirbase
          Length = 100

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                     
Query: 29 aatccaggtttcgatcactaattggtgtgatcaccgggattct 71
          ||||| ||||| |||||||| |||  |||||||||||||||||
Sbjct: 33 aatcccggttttgatcactagttgcagtgatcaccgggattct 75