miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>38678_ppc-mir-2241a-5:mirbase
          Length = 88

 Score =  174 bits (88), Expect = 7e-45
 Identities = 88/88 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  attcgatacgcctctgatcttcaggatccctgtctgaacatcgaaattgagtgttcgcaa 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  attcgatacgcctctgatcttcaggatccctgtctgaacatcgaaattgagtgttcgcaa 60

                                      
Query: 61 ggattcctcaagatcagggcctcgaatc 88
          ||||||||||||||||||||||||||||
Sbjct: 61 ggattcctcaagatcagggcctcgaatc 88




>38674_ppc-mir-2241a-1:mirbase
          Length = 88

 Score =  167 bits (84), Expect = 2e-42
 Identities = 87/88 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  attcgatacgcctctgatcttcaggatccctgtctgaacatcgaaattgagtgttcgcaa 60
          |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1  attcgatacgcctctgatcttcaggatccctgtctgaacaccgaaattgagtgttcgcaa 60

                                      
Query: 61 ggattcctcaagatcagggcctcgaatc 88
          ||||||||||||||||||||||||||||
Sbjct: 61 ggattcctcaagatcagggcctcgaatc 88




>38680_ppc-mir-2241b-2:mirbase
          Length = 97

 Score =  137 bits (69), Expect = 1e-33
 Identities = 81/85 (95%)
 Strand = Plus / Plus

                                                                      
Query: 1  attcgatacgcctctgatcttcaggatccctgtctgaacatcgaaattgagtgttcgcaa 60
          ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||
Sbjct: 6  attcgatacgcctctgatcttcaggatccctgtctgaacacagaaattgagtgttcgcaa 65

                                   
Query: 61 ggattcctcaagatcagggcctcga 85
          || ||||||||||||||||| ||||
Sbjct: 66 ggtttcctcaagatcagggcttcga 90




>38679_ppc-mir-2241b-1:mirbase
          Length = 97

 Score =  137 bits (69), Expect = 1e-33
 Identities = 81/85 (95%)
 Strand = Plus / Plus

                                                                      
Query: 1  attcgatacgcctctgatcttcaggatccctgtctgaacatcgaaattgagtgttcgcaa 60
          ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||
Sbjct: 6  attcgatacgcctctgatcttcaggatccctgtctgaacacagaaattgagtgttcgcaa 65

                                   
Query: 61 ggattcctcaagatcagggcctcga 85
          || ||||||||||||||||| ||||
Sbjct: 66 ggtttcctcaagatcagggcttcga 90




>38681_ppc-mir-2241b-3:mirbase
          Length = 97

 Score =  135 bits (68), Expect = 6e-33
 Identities = 80/84 (95%)
 Strand = Plus / Plus

                                                                      
Query: 2  ttcgatacgcctctgatcttcaggatccctgtctgaacatcgaaattgagtgttcgcaag 61
          |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||
Sbjct: 7  ttcgatacgcctctgatcttcaggatccctgtctgaacacagaaattgagtgttcgcaag 66

                                  
Query: 62 gattcctcaagatcagggcctcga 85
          | ||||||||||||||||| ||||
Sbjct: 67 gtttcctcaagatcagggcttcga 90




>38682_ppc-mir-2241c:mirbase
          Length = 97

 Score =  129 bits (65), Expect = 4e-31
 Identities = 80/85 (94%)
 Strand = Plus / Plus

                                                                      
Query: 1  attcgatacgcctctgatcttcaggatccctgtctgaacatcgaaattgagtgttcgcaa 60
          ||||||||||||||||||||||||||||||||||||||||  |||||||||||||| |||
Sbjct: 6  attcgatacgcctctgatcttcaggatccctgtctgaacacagaaattgagtgttcacaa 65

                                   
Query: 61 ggattcctcaagatcagggcctcga 85
          || ||||||||||||||||| ||||
Sbjct: 66 ggtttcctcaagatcagggcttcga 90




>38677_ppc-mir-2241a-4:mirbase
          Length = 97

 Score =  117 bits (59), Expect = 1e-27
 Identities = 68/71 (95%)
 Strand = Plus / Plus

                                                                      
Query: 15 tgatcttcaggatccctgtctgaacatcgaaattgagtgttcgcaaggattcctcaagat 74
          ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||
Sbjct: 20 tgatcttcaggatccctgtctgaacacagaaattgagtgttcgcaaggattcctcaagat 79

                     
Query: 75 cagggcctcga 85
          |||||| ||||
Sbjct: 80 cagggcttcga 90




>38676_ppc-mir-2241a-3:mirbase
          Length = 118

 Score =  117 bits (59), Expect = 1e-27
 Identities = 68/71 (95%)
 Strand = Plus / Plus

                                                                      
Query: 15 tgatcttcaggatccctgtctgaacatcgaaattgagtgttcgcaaggattcctcaagat 74
          ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||
Sbjct: 28 tgatcttcaggatccctgtctgaacacagaaattgagtgttcgcaaggattcctcaagat 87

                     
Query: 75 cagggcctcga 85
          |||||| ||||
Sbjct: 88 cagggcttcga 98