miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>38676_ppc-mir-2241a-3:mirbase
Length = 118
Score = 188 bits (95), Expect = 5e-49
Identities = 95/95 (100%)
Strand = Plus / Plus
Query: 3 tctattcgatattgccttgatcttcaggatccctgtctgaacacagaaattgagtgttcg 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 tctattcgatattgccttgatcttcaggatccctgtctgaacacagaaattgagtgttcg 70
Query: 63 caaggattcctcaagatcagggcttcgagtcagct 97
|||||||||||||||||||||||||||||||||||
Sbjct: 71 caaggattcctcaagatcagggcttcgagtcagct 105
>38681_ppc-mir-2241b-3:mirbase
Length = 97
Score = 147 bits (74), Expect = 2e-36
Identities = 77/78 (98%)
Strand = Plus / Plus
Query: 20 tgatcttcaggatccctgtctgaacacagaaattgagtgttcgcaaggattcctcaagat 79
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 20 tgatcttcaggatccctgtctgaacacagaaattgagtgttcgcaaggtttcctcaagat 79
Query: 80 cagggcttcgagtcagct 97
||||||||||||||||||
Sbjct: 80 cagggcttcgagtcagct 97
>38680_ppc-mir-2241b-2:mirbase
Length = 97
Score = 147 bits (74), Expect = 2e-36
Identities = 77/78 (98%)
Strand = Plus / Plus
Query: 20 tgatcttcaggatccctgtctgaacacagaaattgagtgttcgcaaggattcctcaagat 79
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 20 tgatcttcaggatccctgtctgaacacagaaattgagtgttcgcaaggtttcctcaagat 79
Query: 80 cagggcttcgagtcagct 97
||||||||||||||||||
Sbjct: 80 cagggcttcgagtcagct 97
>38679_ppc-mir-2241b-1:mirbase
Length = 97
Score = 147 bits (74), Expect = 2e-36
Identities = 77/78 (98%)
Strand = Plus / Plus
Query: 20 tgatcttcaggatccctgtctgaacacagaaattgagtgttcgcaaggattcctcaagat 79
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 20 tgatcttcaggatccctgtctgaacacagaaattgagtgttcgcaaggtttcctcaagat 79
Query: 80 cagggcttcgagtcagct 97
||||||||||||||||||
Sbjct: 80 cagggcttcgagtcagct 97
>38682_ppc-mir-2241c:mirbase
Length = 97
Score = 139 bits (70), Expect = 4e-34
Identities = 76/78 (97%)
Strand = Plus / Plus
Query: 20 tgatcttcaggatccctgtctgaacacagaaattgagtgttcgcaaggattcctcaagat 79
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 20 tgatcttcaggatccctgtctgaacacagaaattgagtgttcacaaggtttcctcaagat 79
Query: 80 cagggcttcgagtcagct 97
||||||||||||||||||
Sbjct: 80 cagggcttcgagtcagct 97
>38674_ppc-mir-2241a-1:mirbase
Length = 88
Score = 125 bits (63), Expect = 6e-30
Identities = 69/71 (97%)
Strand = Plus / Plus
Query: 20 tgatcttcaggatccctgtctgaacacagaaattgagtgttcgcaaggattcctcaagat 79
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 15 tgatcttcaggatccctgtctgaacaccgaaattgagtgttcgcaaggattcctcaagat 74
Query: 80 cagggcttcga 90
|||||| ||||
Sbjct: 75 cagggcctcga 85
>38678_ppc-mir-2241a-5:mirbase
Length = 88
Score = 117 bits (59), Expect = 2e-27
Identities = 68/71 (95%)
Strand = Plus / Plus
Query: 20 tgatcttcaggatccctgtctgaacacagaaattgagtgttcgcaaggattcctcaagat 79
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 15 tgatcttcaggatccctgtctgaacatcgaaattgagtgttcgcaaggattcctcaagat 74
Query: 80 cagggcttcga 90
|||||| ||||
Sbjct: 75 cagggcctcga 85
>38675_ppc-mir-2241a-2:mirbase
Length = 88
Score = 117 bits (59), Expect = 2e-27
Identities = 68/71 (95%)
Strand = Plus / Plus
Query: 20 tgatcttcaggatccctgtctgaacacagaaattgagtgttcgcaaggattcctcaagat 79
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 15 tgatcttcaggatccctgtctgaacatcgaaattgagtgttcgcaaggattcctcaagat 74
Query: 80 cagggcttcga 90
|||||| ||||
Sbjct: 75 cagggcctcga 85
