miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>38679_ppc-mir-2241b-1:mirbase
Length = 97
Score = 192 bits (97), Expect = 3e-50
Identities = 97/97 (100%)
Strand = Plus / Plus
Query: 1 gctctattcgatacgcctctgatcttcaggatccctgtctgaacacagaaattgagtgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gctctattcgatacgcctctgatcttcaggatccctgtctgaacacagaaattgagtgtt 60
Query: 61 cgcaaggtttcctcaagatcagggcttcgagtcagct 97
|||||||||||||||||||||||||||||||||||||
Sbjct: 61 cgcaaggtttcctcaagatcagggcttcgagtcagct 97
>38682_ppc-mir-2241c:mirbase
Length = 97
Score = 184 bits (93), Expect = 8e-48
Identities = 96/97 (98%)
Strand = Plus / Plus
Query: 1 gctctattcgatacgcctctgatcttcaggatccctgtctgaacacagaaattgagtgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gctctattcgatacgcctctgatcttcaggatccctgtctgaacacagaaattgagtgtt 60
Query: 61 cgcaaggtttcctcaagatcagggcttcgagtcagct 97
| |||||||||||||||||||||||||||||||||||
Sbjct: 61 cacaaggtttcctcaagatcagggcttcgagtcagct 97
>38681_ppc-mir-2241b-3:mirbase
Length = 97
Score = 184 bits (93), Expect = 8e-48
Identities = 96/97 (98%)
Strand = Plus / Plus
Query: 1 gctctattcgatacgcctctgatcttcaggatccctgtctgaacacagaaattgagtgtt 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gctcttttcgatacgcctctgatcttcaggatccctgtctgaacacagaaattgagtgtt 60
Query: 61 cgcaaggtttcctcaagatcagggcttcgagtcagct 97
|||||||||||||||||||||||||||||||||||||
Sbjct: 61 cgcaaggtttcctcaagatcagggcttcgagtcagct 97
>38677_ppc-mir-2241a-4:mirbase
Length = 97
Score = 147 bits (74), Expect = 2e-36
Identities = 77/78 (98%)
Strand = Plus / Plus
Query: 20 tgatcttcaggatccctgtctgaacacagaaattgagtgttcgcaaggtttcctcaagat 79
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 20 tgatcttcaggatccctgtctgaacacagaaattgagtgttcgcaaggattcctcaagat 79
Query: 80 cagggcttcgagtcagct 97
||||||||||||||||||
Sbjct: 80 cagggcttcgagtcagct 97
>38676_ppc-mir-2241a-3:mirbase
Length = 118
Score = 147 bits (74), Expect = 2e-36
Identities = 77/78 (98%)
Strand = Plus / Plus
Query: 20 tgatcttcaggatccctgtctgaacacagaaattgagtgttcgcaaggtttcctcaagat 79
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 28 tgatcttcaggatccctgtctgaacacagaaattgagtgttcgcaaggattcctcaagat 87
Query: 80 cagggcttcgagtcagct 97
||||||||||||||||||
Sbjct: 88 cagggcttcgagtcagct 105
>38674_ppc-mir-2241a-1:mirbase
Length = 88
Score = 145 bits (73), Expect = 7e-36
Identities = 82/85 (96%)
Strand = Plus / Plus
Query: 6 attcgatacgcctctgatcttcaggatccctgtctgaacacagaaattgagtgttcgcaa 65
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1 attcgatacgcctctgatcttcaggatccctgtctgaacaccgaaattgagtgttcgcaa 60
Query: 66 ggtttcctcaagatcagggcttcga 90
|| ||||||||||||||||| ||||
Sbjct: 61 ggattcctcaagatcagggcctcga 85
>38678_ppc-mir-2241a-5:mirbase
Length = 88
Score = 137 bits (69), Expect = 2e-33
Identities = 81/85 (95%)
Strand = Plus / Plus
Query: 6 attcgatacgcctctgatcttcaggatccctgtctgaacacagaaattgagtgttcgcaa 65
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1 attcgatacgcctctgatcttcaggatccctgtctgaacatcgaaattgagtgttcgcaa 60
Query: 66 ggtttcctcaagatcagggcttcga 90
|| ||||||||||||||||| ||||
Sbjct: 61 ggattcctcaagatcagggcctcga 85
>38675_ppc-mir-2241a-2:mirbase
Length = 88
Score = 137 bits (69), Expect = 2e-33
Identities = 81/85 (95%)
Strand = Plus / Plus
Query: 6 attcgatacgcctctgatcttcaggatccctgtctgaacacagaaattgagtgttcgcaa 65
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1 attcgatacgcctctgatcttcaggatccctgtctgaacatcgaaattgagtgttcgcaa 60
Query: 66 ggtttcctcaagatcagggcttcga 90
|| ||||||||||||||||| ||||
Sbjct: 61 ggattcctcaagatcagggcctcga 85
