miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>35002_dpu-mir-12:mirbase
          Length = 101

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 18 ccgtgagtattacatcaggtactg 41
          ||||||||||||||||||||||||
Sbjct: 18 ccgtgagtattacatcaggtactg 41




>38734_cte-mir-12:mirbase
          Length = 101

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 21 tgagtattacatcaggtactgag 43
          |||||||||||||||||||||||
Sbjct: 21 tgagtattacatcaggtactgag 43




>35280_aga-mir-12:mirbase
          Length = 117

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 20 gtgagtattacatcaggtactg 41
          ||||||||||||||||||||||
Sbjct: 6  gtgagtattacatcaggtactg 27




>35351_ame-mir-12:mirbase
          Length = 83

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 20 gtgagtattacatcaggtactg 41
          ||||||||||||||||||||||
Sbjct: 12 gtgagtattacatcaggtactg 33




>37605_nlo-mir-12:mirbase
          Length = 64

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 20 gtgagtattacatcaggtactg 41
          ||||||||||||||||||||||
Sbjct: 5  gtgagtattacatcaggtactg 26




>37638_nvi-mir-12:mirbase
          Length = 84

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 20 gtgagtattacatcaggtactg 41
          ||||||||||||||||||||||
Sbjct: 12 gtgagtattacatcaggtactg 33




>34965_isc-mir-12:mirbase
          Length = 101

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 21 tgagtattacatcaggtactg 41
          |||||||||||||||||||||
Sbjct: 21 tgagtattacatcaggtactg 41




>35179_aae-mir-12:mirbase
          Length = 102

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 21 tgagtattacatcaggtactg 41
          |||||||||||||||||||||
Sbjct: 8  tgagtattacatcaggtactg 28




>36010_cqu-mir-12:mirbase
          Length = 98

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 21 tgagtattacatcaggtactg 41
          |||||||||||||||||||||
Sbjct: 66 tgagtattacatcaggtactg 86




>36093_dan-mir-12:mirbase
          Length = 74

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 21 tgagtattacatcaggtactg 41
          |||||||||||||||||||||
Sbjct: 7  tgagtattacatcaggtactg 27




>36171_der-mir-12:mirbase
          Length = 74

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 21 tgagtattacatcaggtactg 41
          |||||||||||||||||||||
Sbjct: 7  tgagtattacatcaggtactg 27




>36259_dgr-mir-12:mirbase
          Length = 74

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 21 tgagtattacatcaggtactg 41
          |||||||||||||||||||||
Sbjct: 7  tgagtattacatcaggtactg 27




>36357_dme-mir-12:mirbase
          Length = 74

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 21 tgagtattacatcaggtactg 41
          |||||||||||||||||||||
Sbjct: 7  tgagtattacatcaggtactg 27




>36358_dme-mir-12:mirbase
          Length = 74

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 21 tgagtattacatcaggtactg 41
          |||||||||||||||||||||
Sbjct: 7  tgagtattacatcaggtactg 27




>36769_dmo-mir-12:mirbase
          Length = 74

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 21 tgagtattacatcaggtactg 41
          |||||||||||||||||||||
Sbjct: 7  tgagtattacatcaggtactg 27




>36842_dpe-mir-12:mirbase
          Length = 74

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 21 tgagtattacatcaggtactg 41
          |||||||||||||||||||||
Sbjct: 7  tgagtattacatcaggtactg 27




>36918_dps-mir-12:mirbase
          Length = 74

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 21 tgagtattacatcaggtactg 41
          |||||||||||||||||||||
Sbjct: 7  tgagtattacatcaggtactg 27




>37131_dse-mir-12:mirbase
          Length = 74

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 21 tgagtattacatcaggtactg 41
          |||||||||||||||||||||
Sbjct: 7  tgagtattacatcaggtactg 27




>37207_dsi-mir-12:mirbase
          Length = 74

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 21 tgagtattacatcaggtactg 41
          |||||||||||||||||||||
Sbjct: 7  tgagtattacatcaggtactg 27




>37345_dvi-mir-12:mirbase
          Length = 74

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 21 tgagtattacatcaggtactg 41
          |||||||||||||||||||||
Sbjct: 7  tgagtattacatcaggtactg 27




>37422_dwi-mir-12:mirbase
          Length = 74

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 21 tgagtattacatcaggtactg 41
          |||||||||||||||||||||
Sbjct: 7  tgagtattacatcaggtactg 27




>37709_tca-mir-12:mirbase
          Length = 87

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 21 tgagtattacatcaggtactg 41
          |||||||||||||||||||||
Sbjct: 16 tgagtattacatcaggtactg 36




>37710_tca-mir-12:mirbase
          Length = 87

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 21 tgagtattacatcaggtactg 41
          |||||||||||||||||||||
Sbjct: 16 tgagtattacatcaggtactg 36