miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>38737_cte-mir-31:mirbase
          Length = 101

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 15 cagactaggcaagatgttggcatagctga 43
          ||||| |||||||||||||||||||||||
Sbjct: 15 cagaccaggcaagatgttggcatagctga 43




>38534_crm-mir-72:mirbase
          Length = 113

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 19 ctaggcaagatgttggcatagctga 43
          |||||||||||||||||||||||||
Sbjct: 19 ctaggcaagatgttggcatagctga 43




>38308_cel-mir-72:mirbase
          Length = 99

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 19 ctaggcaagatgttggcatagctga 43
          |||||||||||||||||||||||||
Sbjct: 15 ctaggcaagatgttggcatagctga 39




>38622_ppc-mir-72:mirbase
          Length = 109

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 21 aggcaagatgttggcatagctga 43
          |||||||||||||||||||||||
Sbjct: 24 aggcaagatgttggcatagctga 46




>38106_bma-mir-72:mirbase
          Length = 115

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 21 aggcaagatgttggcatagctga 43
          |||||||||||||||||||||||
Sbjct: 18 aggcaagatgttggcatagctga 40




>25738_xtr-mir-31:mirbase
          Length = 88

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 21 aggcaagatgttggcatagctg 42
          ||||||||||||||||||||||
Sbjct: 17 aggcaagatgttggcatagctg 38




>25922_gga-mir-31:mirbase
          Length = 94

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 21 aggcaagatgttggcatagctg 42
          ||||||||||||||||||||||
Sbjct: 25 aggcaagatgttggcatagctg 46




>26429_tgu-mir-31:mirbase
          Length = 109

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 21 aggcaagatgttggcatagctg 42
          ||||||||||||||||||||||
Sbjct: 25 aggcaagatgttggcatagctg 46




>27357_mdo-mir-31:mirbase
          Length = 87

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 21 aggcaagatgttggcatagctg 42
          ||||||||||||||||||||||
Sbjct: 12 aggcaagatgttggcatagctg 33




>31456_oan-mir-31:mirbase
          Length = 136

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 21 aggcaagatgttggcatagctg 42
          ||||||||||||||||||||||
Sbjct: 17 aggcaagatgttggcatagctg 38




>34813_spu-mir-31:mirbase
          Length = 99

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 21 aggcaagatgttggcatagctg 42
          ||||||||||||||||||||||
Sbjct: 19 aggcaagatgttggcatagctg 40




>34869_sko-mir-31:mirbase
          Length = 101

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 21 aggcaagatgttggcatagctg 42
          ||||||||||||||||||||||
Sbjct: 21 aggcaagatgttggcatagctg 42




>35182_aae-mir-31:mirbase
          Length = 149

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 22 ggcaagatgttggcatagctga 43
          ||||||||||||||||||||||
Sbjct: 52 ggcaagatgttggcatagctga 73




>36013_cqu-mir-31:mirbase
          Length = 87

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 22 ggcaagatgttggcatagctga 43
          ||||||||||||||||||||||
Sbjct: 13 ggcaagatgttggcatagctga 34




>24656_bfl-mir-31:mirbase
          Length = 101

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 22 ggcaagatgttggcatagctg 42
          |||||||||||||||||||||
Sbjct: 20 ggcaagatgttggcatagctg 40




>34252_dre-mir-31:mirbase
          Length = 72

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 22 ggcaagatgttggcatagctg 42
          |||||||||||||||||||||
Sbjct: 9  ggcaagatgttggcatagctg 29




>24814_cin-mir-31:mirbase
          Length = 102

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 22 ggcaagatgttggcatagct 41
          ||||||||||||||||||||
Sbjct: 17 ggcaagatgttggcatagct 36




>25319_csa-mir-31:mirbase
          Length = 82

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 22 ggcaagatgttggcatagct 41
          ||||||||||||||||||||
Sbjct: 17 ggcaagatgttggcatagct 36