miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>38745_cte-mir-87b:mirbase
          Length = 100

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 59 aggtgagcaaagtttcaggtgtatc 83
          |||||||||||||||||||||||||
Sbjct: 59 aggtgagcaaagtttcaggtgtatc 83




>35361_ame-mir-87-1:mirbase
          Length = 100

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 58 aaggtgagcaaagtttcaggtgt 80
          |||||||||||||||||||||||
Sbjct: 67 aaggtgagcaaagtttcaggtgt 89




>38628_ppc-mir-87:mirbase
          Length = 98

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 59 aggtgagcaaagtttcaggtgt 80
          ||||||||||||||||||||||
Sbjct: 59 aggtgagcaaagtttcaggtgt 80




>38550_crm-mir-87:mirbase
          Length = 98

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 59 aggtgagcaaagtttcaggtgt 80
          ||||||||||||||||||||||
Sbjct: 62 aggtgagcaaagtttcaggtgt 83




>34968_isc-mir-87:mirbase
          Length = 101

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 59 aggtgagcaaagtttcaggtgt 80
          ||||||||||||||||||||||
Sbjct: 59 aggtgagcaaagtttcaggtgt 80




>35056_api-mir-87a:mirbase
          Length = 66

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 59 aggtgagcaaagtttcaggtgt 80
          ||||||||||||||||||||||
Sbjct: 43 aggtgagcaaagtttcaggtgt 64




>38108_bma-mir-87a:mirbase
          Length = 91

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 59 aggtgagcaaagtttcaggtgt 80
          ||||||||||||||||||||||
Sbjct: 49 aggtgagcaaagtttcaggtgt 70




>38198_cbr-mir-87:mirbase
          Length = 95

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 59 aggtgagcaaagtttcaggtgt 80
          ||||||||||||||||||||||
Sbjct: 59 aggtgagcaaagtttcaggtgt 80




>38327_cel-mir-87:mirbase
          Length = 94

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 59 aggtgagcaaagtttcaggtgt 80
          ||||||||||||||||||||||
Sbjct: 59 aggtgagcaaagtttcaggtgt 80




>38941_emu-mir-87:mirbase
          Length = 92

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 60 ggtgagcaaagtttcaggtgt 80
          |||||||||||||||||||||
Sbjct: 72 ggtgagcaaagtttcaggtgt 92




>38918_egr-mir-87:mirbase
          Length = 92

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 60 ggtgagcaaagtttcaggtgt 80
          |||||||||||||||||||||
Sbjct: 72 ggtgagcaaagtttcaggtgt 92




>38744_cte-mir-87a:mirbase
          Length = 101

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 60 ggtgagcaaagtttcaggtgt 80
          |||||||||||||||||||||
Sbjct: 60 ggtgagcaaagtttcaggtgt 80




>35362_ame-mir-87-2:mirbase
          Length = 100

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 60 ggtgagcaaagtttcaggtgt 80
          |||||||||||||||||||||
Sbjct: 69 ggtgagcaaagtttcaggtgt 89




>37727_tca-mir-87a:mirbase
          Length = 82

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 60 ggtgagcaaagtttcaggtgt 80
          |||||||||||||||||||||
Sbjct: 51 ggtgagcaaagtttcaggtgt 71




>37728_tca-mir-87a:mirbase
          Length = 82

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 60 ggtgagcaaagtttcaggtgt 80
          |||||||||||||||||||||
Sbjct: 51 ggtgagcaaagtttcaggtgt 71




>35057_api-mir-87b:mirbase
          Length = 63

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 58 aaggtgagcaaagtttcagg 77
          ||||||||||||||||||||
Sbjct: 39 aaggtgagcaaagtttcagg 58




>38109_bma-mir-87b:mirbase
          Length = 87

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 57 gaaggtgagcaaagtttcaggtgt 80
          ||||||||||||||| ||||||||
Sbjct: 44 gaaggtgagcaaagtctcaggtgt 67