miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: BLAST

BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>34833_spu-mir-242:mirbase
          Length = 100

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 17 ttgcgtaggcgttgtgcacagt 38
          ||||||||||||||||||||||
Sbjct: 20 ttgcgtaggcgttgtgcacagt 41

>34891_sko-mir-242:mirbase
          Length = 101

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 17 ttgcgtaggcgttgtgcacagt 38
          ||||||||||||||||||||||
Sbjct: 20 ttgcgtaggcgttgtgcacagt 41

>24699_bfl-mir-242:mirbase
          Length = 86

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 17 ttgcgtaggcgttgtgcaca 36
          ||||||||||||||||||||
Sbjct: 16 ttgcgtaggcgttgtgcaca 35

>38879_lgi-mir-242b:mirbase
          Length = 80

 Score = 38.2 bits (19), Expect = 0.001
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                 
Query: 17 ttgcgtaggcgttgtgcacagtt 39
          |||||||||| ||||||||||||
Sbjct: 9  ttgcgtaggcattgtgcacagtt 31