miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>39076_sme-mir-31b-2:mirbase
Length = 64
Score = 127 bits (64), Expect = 9e-31
Identities = 64/64 (100%)
Strand = Plus / Plus
Query: 1 caaggcaagatgctggcatagctgataaactatttattaccagctattcaggatctttcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 caaggcaagatgctggcatagctgataaactatttattaccagctattcaggatctttcc 60
Query: 61 atga 64
||||
Sbjct: 61 atga 64
>39075_sme-mir-31b-1:mirbase
Length = 85
Score = 119 bits (60), Expect = 2e-28
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 1 caaggcaagatgctggcatagctgataaactatttattaccagctattcaggatctttcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 caaggcaagatgctggcatagctgataaactatttattaccagctattcaggatctttcc 71
>26659_cfa-mir-31:mirbase
Length = 59
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 3 aggcaagatgctggcatagctg 24
||||||||||||||||||||||
Sbjct: 1 aggcaagatgctggcatagctg 22
>26980_eca-mir-31:mirbase
Length = 67
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 3 aggcaagatgctggcatagctg 24
||||||||||||||||||||||
Sbjct: 8 aggcaagatgctggcatagctg 29
>27687_mml-mir-31:mirbase
Length = 71
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 3 aggcaagatgctggcatagctg 24
||||||||||||||||||||||
Sbjct: 8 aggcaagatgctggcatagctg 29
>28194_mne-mir-31:mirbase
Length = 71
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 3 aggcaagatgctggcatagctg 24
||||||||||||||||||||||
Sbjct: 8 aggcaagatgctggcatagctg 29
>28282_ggo-mir-31:mirbase
Length = 71
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 3 aggcaagatgctggcatagctg 24
||||||||||||||||||||||
Sbjct: 8 aggcaagatgctggcatagctg 29
>28397_hsa-mir-31:mirbase
Length = 71
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 3 aggcaagatgctggcatagctg 24
||||||||||||||||||||||
Sbjct: 8 aggcaagatgctggcatagctg 29
>30069_ppa-mir-31:mirbase
Length = 71
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 3 aggcaagatgctggcatagctg 24
||||||||||||||||||||||
Sbjct: 8 aggcaagatgctggcatagctg 29
>30183_ptr-mir-31:mirbase
Length = 71
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 3 aggcaagatgctggcatagctg 24
||||||||||||||||||||||
Sbjct: 8 aggcaagatgctggcatagctg 29
>30787_ppy-mir-31:mirbase
Length = 71
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 3 aggcaagatgctggcatagctg 24
||||||||||||||||||||||
Sbjct: 8 aggcaagatgctggcatagctg 29
>31812_mmu-mir-31:mirbase
Length = 106
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 3 aggcaagatgctggcatagctg 24
||||||||||||||||||||||
Sbjct: 28 aggcaagatgctggcatagctg 49
>32694_rno-mir-31:mirbase
Length = 106
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 3 aggcaagatgctggcatagctg 24
||||||||||||||||||||||
Sbjct: 28 aggcaagatgctggcatagctg 49
>33042_rno-mir-3554:mirbase
Length = 118
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 3 aggcaagatgctggcatagctg 24
||||||||||||||||||||||
Sbjct: 85 aggcaagatgctggcatagctg 64
>33171_bta-mir-31:mirbase
Length = 94
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 3 aggcaagatgctggcatagctg 24
||||||||||||||||||||||
Sbjct: 25 aggcaagatgctggcatagctg 46
>38106_bma-mir-72:mirbase
Length = 115
Score = 42.1 bits (21), Expect = 4e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1 caaggcaagatgctggcatagctga 25
|||||||||||| ||||||||||||
Sbjct: 16 caaggcaagatgttggcatagctga 40
>38737_cte-mir-31:mirbase
Length = 101
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 3 aggcaagatgctggcatagctgat 26
|||||||||| |||||||||||||
Sbjct: 21 aggcaagatgttggcatagctgat 44
>38622_ppc-mir-72:mirbase
Length = 109
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 3 aggcaagatgctggcatagctgat 26
|||||||||| |||||||||||||
Sbjct: 24 aggcaagatgttggcatagctgat 47
>38856_lgi-mir-31:mirbase
Length = 101
Score = 38.2 bits (19), Expect = 7e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 3 aggcaagatgctggcatagctga 25
|||||||||| ||||||||||||
Sbjct: 21 aggcaagatgttggcatagctga 43
>38534_crm-mir-72:mirbase
Length = 113
Score = 38.2 bits (19), Expect = 7e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 3 aggcaagatgctggcatagctga 25
|||||||||| ||||||||||||
Sbjct: 21 aggcaagatgttggcatagctga 43
>25463_pma-mir-31:mirbase
Length = 78
Score = 38.2 bits (19), Expect = 7e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 4 ggcaagatgctggcatagc 22
|||||||||||||||||||
Sbjct: 12 ggcaagatgctggcatagc 30
>31456_oan-mir-31:mirbase
Length = 136
Score = 38.2 bits (19), Expect = 7e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 2 aaggcaagatgctggcatagctg 24
||||||||||| |||||||||||
Sbjct: 16 aaggcaagatgttggcatagctg 38
>34813_spu-mir-31:mirbase
Length = 99
Score = 38.2 bits (19), Expect = 7e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 2 aaggcaagatgctggcatagctg 24
||||||||||| |||||||||||
Sbjct: 18 aaggcaagatgttggcatagctg 40
>38308_cel-mir-72:mirbase
Length = 99
Score = 38.2 bits (19), Expect = 7e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 3 aggcaagatgctggcatagctga 25
|||||||||| ||||||||||||
Sbjct: 17 aggcaagatgttggcatagctga 39
