miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: BLAST

BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>39146_sme-mir-753d:mirbase
          Length = 58

 Score =  115 bits (58), Expect = 3e-27
 Identities = 58/58 (100%)
 Strand = Plus / Plus

                                                                    
Query: 1  tcagggcttggattgtgatctcgtatatttatgagatcattattcaagctctctaaat 58
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  tcagggcttggattgtgatctcgtatatttatgagatcattattcaagctctctaaat 58

>39145_sme-mir-753c:mirbase
          Length = 90

 Score = 85.7 bits (43), Expect = 3e-18
 Identities = 46/47 (97%)
 Strand = Plus / Plus

                                                         
Query: 6  gcttggattgtgatctcgtatatttatgagatcattattcaagctct 52
          ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 23 gcttggattgtgatctcatatatttatgagatcattattcaagctct 69

>39142_sme-mir-753:mirbase
          Length = 77

 Score = 85.7 bits (43), Expect = 3e-18
 Identities = 46/47 (97%)
 Strand = Plus / Plus

                                                         
Query: 6  gcttggattgtgatctcgtatatttatgagatcattattcaagctct 52
          ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 17 gcttggattgtgatctcatatatttatgagatcattattcaagctct 63

>39144_sme-mir-753b:mirbase
          Length = 91

 Score = 71.9 bits (36), Expect = 4e-14
 Identities = 45/48 (93%)
 Strand = Plus / Plus

                                                          
Query: 5  ggcttggattgtgatctcgtatatttatgagatcattattcaagctct 52
          |||||| ||||||||||| |||||||||||||||||| ||||||||||
Sbjct: 22 ggcttgaattgtgatctcatatatttatgagatcattgttcaagctct 69

>39143_sme-mir-753b:mirbase
          Length = 91

 Score = 71.9 bits (36), Expect = 4e-14
 Identities = 45/48 (93%)
 Strand = Plus / Plus

                                                          
Query: 5  ggcttggattgtgatctcgtatatttatgagatcattattcaagctct 52
          |||||| ||||||||||| |||||||||||||||||| ||||||||||
Sbjct: 22 ggcttgaattgtgatctcatatatttatgagatcattgttcaagctct 69

>39148_sme-mir-753e:mirbase
          Length = 57

 Score = 56.0 bits (28), Expect = 3e-09
 Identities = 43/48 (89%)
 Strand = Plus / Plus

                                                          
Query: 5  ggcttggattgtgatctcgtatatttatgagatcattattcaagctct 52
          |||||| ||||||||||| || |  |||||||||||||||||||||||
Sbjct: 4  ggcttgaattgtgatctcataaacctatgagatcattattcaagctct 51