miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>39151_sme-mir-754b-2:mirbase
Length = 86
Score = 163 bits (82), Expect = 3e-41
Identities = 85/86 (98%)
Strand = Plus / Plus
Query: 3 ttatcatccacccagcatgttgcttgggggtattactatatttattaatataattttatc 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttatcatccacccagcatgttgcttgggggtattactatatttattaatataattttatc 60
Query: 63 atcaagcaatatcagaggtgaaatat 88
|||||||||||||||||||| |||||
Sbjct: 61 atcaagcaatatcagaggtggaatat 86
>39152_sme-mir-754c-1:mirbase
Length = 93
Score = 127 bits (64), Expect = 2e-30
Identities = 83/88 (94%), Gaps = 1/88 (1%)
Strand = Plus / Plus
Query: 6 tcatccacccagcatgttgcttgggggtattactatatttattaatataattttatcatc 65
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||
Sbjct: 6 tcatccacccagcatgttgcttgggg-tattactatatttattaatatagttttatcttc 64
Query: 66 aagcaatatcagaggtgaaatattcaac 93
|||||||||| |||||| ||||||||||
Sbjct: 65 aagcaatatcggaggtggaatattcaac 92
>39154_sme-mir-754d:mirbase
Length = 94
Score = 125 bits (63), Expect = 6e-30
Identities = 78/83 (93%)
Strand = Plus / Plus
Query: 11 cacccagcatgttgcttgggggtattactatatttattaatataattttatcatcaagca 70
||||||||||||||||||||||||||| |||||||||| ||||| ||||||| |||||||
Sbjct: 11 cacccagcatgttgcttgggggtattattatatttattgatatagttttatcttcaagca 70
Query: 71 atatcagaggtgaaatattcaac 93
|||||||||||| ||||||||||
Sbjct: 71 atatcagaggtggaatattcaac 93
>39153_sme-mir-754c-2:mirbase
Length = 78
Score = 109 bits (55), Expect = 4e-25
Identities = 71/75 (94%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 8 atccacccagcatgttgcttgggggtattactatatttattaatataattttatcatcaa 67
|||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||
Sbjct: 1 atccacccagcatgttgcttgggg-tattactatatttattaatatagttttatcttcat 59
Query: 68 gcaatatcagaggtg 82
|||||||||||||||
Sbjct: 60 gcaatatcagaggtg 74
>39149_sme-mir-754a:mirbase
Length = 73
Score = 109 bits (55), Expect = 4e-25
Identities = 64/67 (95%)
Strand = Plus / Plus
Query: 12 acccagcatgttgcttgggggtattactatatttattaatataattttatcatcaagcaa 71
|||||||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||
Sbjct: 1 acccagcatgttgcttggggttattactatatttattaatatagttttatcttcaagcaa 60
Query: 72 tatcaga 78
|||||||
Sbjct: 61 tatcaga 67
