miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>39150_sme-mir-754b-1:mirbase
Length = 94
Score = 163 bits (82), Expect = 2e-41
Identities = 85/86 (98%)
Strand = Plus / Plus
Query: 1 ttatcatccacccagcatgttgcttgggggtattactatatttattaatataattttatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 ttatcatccacccagcatgttgcttgggggtattactatatttattaatataattttatc 62
Query: 61 atcaagcaatatcagaggtggaatat 86
|||||||||||||||||||| |||||
Sbjct: 63 atcaagcaatatcagaggtgaaatat 88
>39152_sme-mir-754c-1:mirbase
Length = 93
Score = 125 bits (63), Expect = 5e-30
Identities = 79/83 (95%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 4 tcatccacccagcatgttgcttgggggtattactatatttattaatataattttatcatc 63
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||
Sbjct: 6 tcatccacccagcatgttgcttgggg-tattactatatttattaatatagttttatcttc 64
Query: 64 aagcaatatcagaggtggaatat 86
|||||||||| ||||||||||||
Sbjct: 65 aagcaatatcggaggtggaatat 87
>39154_sme-mir-754d:mirbase
Length = 94
Score = 123 bits (62), Expect = 2e-29
Identities = 74/78 (94%)
Strand = Plus / Plus
Query: 9 cacccagcatgttgcttgggggtattactatatttattaatataattttatcatcaagca 68
||||||||||||||||||||||||||| |||||||||| ||||| ||||||| |||||||
Sbjct: 11 cacccagcatgttgcttgggggtattattatatttattgatatagttttatcttcaagca 70
Query: 69 atatcagaggtggaatat 86
||||||||||||||||||
Sbjct: 71 atatcagaggtggaatat 88
>39153_sme-mir-754c-2:mirbase
Length = 78
Score = 117 bits (59), Expect = 1e-27
Identities = 75/79 (94%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 6 atccacccagcatgttgcttgggggtattactatatttattaatataattttatcatcaa 65
|||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||
Sbjct: 1 atccacccagcatgttgcttgggg-tattactatatttattaatatagttttatcttcat 59
Query: 66 gcaatatcagaggtggaat 84
|||||||||||||||||||
Sbjct: 60 gcaatatcagaggtggaat 78
>39149_sme-mir-754a:mirbase
Length = 73
Score = 113 bits (57), Expect = 2e-26
Identities = 69/73 (94%)
Strand = Plus / Plus
Query: 10 acccagcatgttgcttgggggtattactatatttattaatataattttatcatcaagcaa 69
|||||||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||
Sbjct: 1 acccagcatgttgcttggggttattactatatttattaatatagttttatcttcaagcaa 60
Query: 70 tatcagaggtgga 82
||||||| |||||
Sbjct: 61 tatcagatgtgga 73
