miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>39153_sme-mir-754c-2:mirbase
Length = 78
Score = 139 bits (70), Expect = 4e-34
Identities = 76/78 (97%)
Strand = Plus / Plus
Query: 8 atccacccagcatgttgcttggggtattactatatttattaatatagttttatcttcaag 67
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 1 atccacccagcatgttgcttggggtattactatatttattaatatagttttatcttcatg 60
Query: 68 caatatcggaggtggaat 85
||||||| ||||||||||
Sbjct: 61 caatatcagaggtggaat 78
>39154_sme-mir-754d:mirbase
Length = 94
Score = 127 bits (64), Expect = 1e-30
Identities = 80/84 (95%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 11 cacccagcatgttgcttgggg-tattactatatttattaatatagttttatcttcaagca 69
||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||
Sbjct: 11 cacccagcatgttgcttgggggtattattatatttattgatatagttttatcttcaagca 70
Query: 70 atatcggaggtggaatattcaaca 93
||||| ||||||||||||||||||
Sbjct: 71 atatcagaggtggaatattcaaca 94
>39150_sme-mir-754b-1:mirbase
Length = 94
Score = 127 bits (64), Expect = 1e-30
Identities = 83/88 (94%), Gaps = 1/88 (1%)
Strand = Plus / Plus
Query: 6 tcatccacccagcatgttgcttgggg-tattactatatttattaatatagttttatcttc 64
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||
Sbjct: 6 tcatccacccagcatgttgcttgggggtattactatatttattaatataattttatcatc 65
Query: 65 aagcaatatcggaggtggaatattcaac 92
|||||||||| |||||| ||||||||||
Sbjct: 66 aagcaatatcagaggtgaaatattcaac 93
>39151_sme-mir-754b-2:mirbase
Length = 86
Score = 125 bits (63), Expect = 6e-30
Identities = 79/83 (95%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 6 tcatccacccagcatgttgcttgggg-tattactatatttattaatatagttttatcttc 64
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||
Sbjct: 4 tcatccacccagcatgttgcttgggggtattactatatttattaatataattttatcatc 63
Query: 65 aagcaatatcggaggtggaatat 87
|||||||||| ||||||||||||
Sbjct: 64 aagcaatatcagaggtggaatat 86
>39149_sme-mir-754a:mirbase
Length = 73
Score = 113 bits (57), Expect = 2e-26
Identities = 70/73 (95%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 12 acccagcatgttgcttggggt-attactatatttattaatatagttttatcttcaagcaa 70
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 1 acccagcatgttgcttggggttattactatatttattaatatagttttatcttcaagcaa 60
Query: 71 tatcggaggtgga 83
|||| || |||||
Sbjct: 61 tatcagatgtgga 73
