miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>39152_sme-mir-754c-1:mirbase
Length = 93
Score = 139 bits (70), Expect = 3e-34
Identities = 76/78 (97%)
Strand = Plus / Plus
Query: 1 atccacccagcatgttgcttggggtattactatatttattaatatagttttatcttcatg 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 8 atccacccagcatgttgcttggggtattactatatttattaatatagttttatcttcaag 67
Query: 61 caatatcagaggtggaat 78
||||||| ||||||||||
Sbjct: 68 caatatcggaggtggaat 85
>39151_sme-mir-754b-2:mirbase
Length = 86
Score = 117 bits (59), Expect = 1e-27
Identities = 75/79 (94%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 1 atccacccagcatgttgcttgggg-tattactatatttattaatatagttttatcttcat 59
|||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||
Sbjct: 6 atccacccagcatgttgcttgggggtattactatatttattaatataattttatcatcaa 65
Query: 60 gcaatatcagaggtggaat 78
|||||||||||||||||||
Sbjct: 66 gcaatatcagaggtggaat 84
>39149_sme-mir-754a:mirbase
Length = 73
Score = 113 bits (57), Expect = 2e-26
Identities = 70/73 (95%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 5 acccagcatgttgcttggggt-attactatatttattaatatagttttatcttcatgcaa 63
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct: 1 acccagcatgttgcttggggttattactatatttattaatatagttttatcttcaagcaa 60
Query: 64 tatcagaggtgga 76
||||||| |||||
Sbjct: 61 tatcagatgtgga 73
>39154_sme-mir-754d:mirbase
Length = 94
Score = 111 bits (56), Expect = 7e-26
Identities = 72/76 (94%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 4 cacccagcatgttgcttgggg-tattactatatttattaatatagttttatcttcatgca 62
||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||| |||
Sbjct: 11 cacccagcatgttgcttgggggtattattatatttattgatatagttttatcttcaagca 70
Query: 63 atatcagaggtggaat 78
||||||||||||||||
Sbjct: 71 atatcagaggtggaat 86
>39150_sme-mir-754b-1:mirbase
Length = 94
Score = 109 bits (55), Expect = 3e-25
Identities = 71/75 (94%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 1 atccacccagcatgttgcttgggg-tattactatatttattaatatagttttatcttcat 59
|||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||
Sbjct: 8 atccacccagcatgttgcttgggggtattactatatttattaatataattttatcatcaa 67
Query: 60 gcaatatcagaggtg 74
|||||||||||||||
Sbjct: 68 gcaatatcagaggtg 82
