miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>39152_sme-mir-754c-1:mirbase
Length = 93
Score = 127 bits (64), Expect = 2e-30
Identities = 80/84 (95%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 11 cacccagcatgttgcttgggggtattattatatttattgatatagttttatcttcaagca 70
||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||
Sbjct: 11 cacccagcatgttgcttgggg-tattactatatttattaatatagttttatcttcaagca 69
Query: 71 atatcagaggtggaatattcaaca 94
||||| ||||||||||||||||||
Sbjct: 70 atatcggaggtggaatattcaaca 93
>39150_sme-mir-754b-1:mirbase
Length = 94
Score = 125 bits (63), Expect = 6e-30
Identities = 78/83 (93%)
Strand = Plus / Plus
Query: 11 cacccagcatgttgcttgggggtattattatatttattgatatagttttatcttcaagca 70
||||||||||||||||||||||||||| |||||||||| ||||| ||||||| |||||||
Sbjct: 11 cacccagcatgttgcttgggggtattactatatttattaatataattttatcatcaagca 70
Query: 71 atatcagaggtggaatattcaac 93
|||||||||||| ||||||||||
Sbjct: 71 atatcagaggtgaaatattcaac 93
>39151_sme-mir-754b-2:mirbase
Length = 86
Score = 123 bits (62), Expect = 2e-29
Identities = 74/78 (94%)
Strand = Plus / Plus
Query: 11 cacccagcatgttgcttgggggtattattatatttattgatatagttttatcttcaagca 70
||||||||||||||||||||||||||| |||||||||| ||||| ||||||| |||||||
Sbjct: 9 cacccagcatgttgcttgggggtattactatatttattaatataattttatcatcaagca 68
Query: 71 atatcagaggtggaatat 88
||||||||||||||||||
Sbjct: 69 atatcagaggtggaatat 86
>39149_sme-mir-754a:mirbase
Length = 73
Score = 113 bits (57), Expect = 2e-26
Identities = 69/73 (94%)
Strand = Plus / Plus
Query: 12 acccagcatgttgcttgggggtattattatatttattgatatagttttatcttcaagcaa 71
|||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||
Sbjct: 1 acccagcatgttgcttggggttattactatatttattaatatagttttatcttcaagcaa 60
Query: 72 tatcagaggtgga 84
||||||| |||||
Sbjct: 61 tatcagatgtgga 73
>39153_sme-mir-754c-2:mirbase
Length = 78
Score = 111 bits (56), Expect = 9e-26
Identities = 72/76 (94%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 11 cacccagcatgttgcttgggggtattattatatttattgatatagttttatcttcaagca 70
||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||| |||
Sbjct: 4 cacccagcatgttgcttgggg-tattactatatttattaatatagttttatcttcatgca 62
Query: 71 atatcagaggtggaat 86
||||||||||||||||
Sbjct: 63 atatcagaggtggaat 78
