miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>39493_ppt-MIR477a:mirbase
Length = 85
Score = 168 bits (85), Expect = 4e-43
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 1 gttgctttttcctctccctcaaaggcttccaacatgatgtgcgtaagccacaacgttaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gttgctttttcctctccctcaaaggcttccaacatgatgtgcgtaagccacaacgttaga 60
Query: 61 agcctttgtgggagaggaagaaaca 85
|||||||||||||||||||||||||
Sbjct: 61 agcctttgtgggagaggaagaaaca 85
>39497_ppt-MIR477d:mirbase
Length = 154
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 2 ttgctttttcctctccctcaaaggcttccaaca 34
|||||| ||||||||||||||||||||||||||
Sbjct: 21 ttgcttgttcctctccctcaaaggcttccaaca 53
>39496_ppt-MIR477c:mirbase
Length = 85
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 1 gttgctttttcctctccctcaaaggcttccaac 33
|||| ||||||||||||||||||||||||||||
Sbjct: 1 gttgatttttcctctccctcaaaggcttccaac 33
>39495_ppt-MIR477b:mirbase
Length = 170
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 10 tcctctccctcaaaggcttccaaca 34
|||||||||||||||||||||||||
Sbjct: 32 tcctctccctcaaaggcttccaaca 56
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 55 gttagaagcctttgtgggagagga 78
||||||||||| ||||||||||||
Sbjct: 117 gttagaagcctctgtgggagagga 140
>39498_ppt-MIR477e:mirbase
Length = 127
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 12 ctctccctcaaaggcttccaacat 35
||||||||||||||||||||||||
Sbjct: 34 ctctccctcaaaggcttccaacat 57
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 57 tagaagcctttgtgggagagg 77
|||||||||||||||||||||
Sbjct: 76 tagaagcctttgtgggagagg 96
>39501_ppt-MIR477g:mirbase
Length = 128
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 13 tctccctcaaaggcttccaaca 34
||||||||||||||||||||||
Sbjct: 12 tctccctcaaaggcttccaaca 33
>39500_ppt-MIR477g:mirbase
Length = 128
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 13 tctccctcaaaggcttccaaca 34
||||||||||||||||||||||
Sbjct: 12 tctccctcaaaggcttccaaca 33
>39499_ppt-MIR477f:mirbase
Length = 127
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 13 tctccctcaaaggcttccaaca 34
||||||||||||||||||||||
Sbjct: 12 tctccctcaaaggcttccaaca 33
>39502_ppt-MIR477h:mirbase
Length = 155
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 13 tctccctcaaaggcttccaac 33
|||||||||||||||||||||
Sbjct: 31 tctccctcaaaggcttccaac 51
>41685_vvi-MIR477:mirbase
Length = 94
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 13 tctccctcaaaggcttccaa 32
||||||||||||||||||||
Sbjct: 12 tctccctcaaaggcttccaa 31
