miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>39500_ppt-MIR477g:mirbase
Length = 128
Score = 254 bits (128), Expect = 1e-68
Identities = 128/128 (100%)
Strand = Plus / Plus
Query: 1 gtgttcgtttttctccctcaaaggcttccaacaacagtcggaattaactctgatgcggcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgttcgtttttctccctcaaaggcttccaacaacagtcggaattaactctgatgcggcc 60
Query: 61 attatcactggttgcagtgaattattctagttctgctgttggaagccttcgtgggagacg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 attatcactggttgcagtgaattattctagttctgctgttggaagccttcgtgggagacg 120
Query: 121 aaagaacc 128
||||||||
Sbjct: 121 aaagaacc 128
>39499_ppt-MIR477f:mirbase
Length = 127
Score = 65.9 bits (33), Expect = 7e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 1 gtgttcgtttttctccctcaaaggcttccaacaacag 37
||||| |||||||||||||||||||||||||||||||
Sbjct: 1 gtgtttgtttttctccctcaaaggcttccaacaacag 37
Score = 46.1 bits (23), Expect = 6e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 92 tctgctgttggaagccttcgtgggagacgaaagaa 126
|||||||| ||||||||||| |||||| |||||||
Sbjct: 91 tctgctgtcggaagccttcgagggagatgaaagaa 125
>39502_ppt-MIR477h:mirbase
Length = 155
Score = 56.0 bits (28), Expect = 6e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 1 gtgttcgtttttctccctcaaaggcttccaac 32
||||| ||||||||||||||||||||||||||
Sbjct: 20 gtgtttgtttttctccctcaaaggcttccaac 51
>39497_ppt-MIR477d:mirbase
Length = 154
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 12 tctccctcaaaggcttccaacaacag 37
||||||||||||||||||||||||||
Sbjct: 32 tctccctcaaaggcttccaacaacag 57
>39498_ppt-MIR477e:mirbase
Length = 127
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 tctccctcaaaggcttccaaca 33
||||||||||||||||||||||
Sbjct: 35 tctccctcaaaggcttccaaca 56
>39495_ppt-MIR477b:mirbase
Length = 170
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 tctccctcaaaggcttccaaca 33
||||||||||||||||||||||
Sbjct: 35 tctccctcaaaggcttccaaca 56
>39494_ppt-MIR477a:mirbase
Length = 85
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 tctccctcaaaggcttccaaca 33
||||||||||||||||||||||
Sbjct: 13 tctccctcaaaggcttccaaca 34
>39493_ppt-MIR477a:mirbase
Length = 85
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 tctccctcaaaggcttccaaca 33
||||||||||||||||||||||
Sbjct: 13 tctccctcaaaggcttccaaca 34
>39496_ppt-MIR477c:mirbase
Length = 85
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 12 tctccctcaaaggcttccaac 32
|||||||||||||||||||||
Sbjct: 13 tctccctcaaaggcttccaac 33
>41685_vvi-MIR477:mirbase
Length = 94
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 tctccctcaaaggcttccaa 31
||||||||||||||||||||
Sbjct: 12 tctccctcaaaggcttccaa 31
