miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>39551_ppt-MIR902d:mirbase
          Length = 129

 Score =  256 bits (129), Expect = 3e-69
 Identities = 129/129 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggatcctcccatttgcgcccactgggttatgatgcagattcttcatctacttcactgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   aaggatcctcccatttgcgcccactgggttatgatgcagattcttcatctacttcactgg 60

                                                                       
Query: 61  agcttccacaagtggtgcaccagatgaaggtctgcatcgtagccgagaggaagcaaattc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  agcttccacaagtggtgcaccagatgaaggtctgcatcgtagccgagaggaagcaaattc 120

                    
Query: 121 ttctggacc 129
           |||||||||
Sbjct: 121 ttctggacc 129




>39548_ppt-MIR902b:mirbase
          Length = 223

 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                 
Query: 81  cagatgaaggtctgcatcgtagccgagaggaagcaaat 118
           |||| ||||||||||||| ||||| |||||||||||||
Sbjct: 148 cagacgaaggtctgcatcatagccaagaggaagcaaat 185



 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 30  tatgatgcagattcttcatct 50
           |||||||||||||||||||||
Sbjct: 98  tatgatgcagattcttcatct 118




>39547_ppt-MIR902b:mirbase
          Length = 223

 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                 
Query: 81  cagatgaaggtctgcatcgtagccgagaggaagcaaat 118
           |||| ||||||||||||| ||||| |||||||||||||
Sbjct: 148 cagacgaaggtctgcatcatagccaagaggaagcaaat 185



 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 30  tatgatgcagattcttcatct 50
           |||||||||||||||||||||
Sbjct: 98  tatgatgcagattcttcatct 118




>39554_ppt-MIR902e:mirbase
          Length = 133

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                 
Query: 81  cagatgaaggtctgcatcgtagccgagaggaagcaaat 118
           |||| ||||||||||||| ||| | |||||||||||||
Sbjct: 81  cagacgaaggtctgcatcatagtcaagaggaagcaaat 118



 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 30 tatgatgcagattcttcatct 50
          |||||||||||||||||||||
Sbjct: 34 tatgatgcagattcttcatct 54




>39553_ppt-MIR902e:mirbase
          Length = 133

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                 
Query: 81  cagatgaaggtctgcatcgtagccgagaggaagcaaat 118
           |||| ||||||||||||| ||| | |||||||||||||
Sbjct: 81  cagacgaaggtctgcatcatagtcaagaggaagcaaat 118



 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 30 tatgatgcagattcttcatct 50
          |||||||||||||||||||||
Sbjct: 34 tatgatgcagattcttcatct 54




>39558_ppt-MIR902g:mirbase
          Length = 141

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 30 tatgatgcagattcttcatct 50
          |||||||||||||||||||||
Sbjct: 34 tatgatgcagattcttcatct 54




>39557_ppt-MIR902g:mirbase
          Length = 141

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 30 tatgatgcagattcttcatct 50
          |||||||||||||||||||||
Sbjct: 34 tatgatgcagattcttcatct 54




>39556_ppt-MIR902f:mirbase
          Length = 123

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 30 tatgatgcagattcttcatct 50
          |||||||||||||||||||||
Sbjct: 30 tatgatgcagattcttcatct 50




>39555_ppt-MIR902f:mirbase
          Length = 123

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 30 tatgatgcagattcttcatct 50
          |||||||||||||||||||||
Sbjct: 30 tatgatgcagattcttcatct 50




>39550_ppt-MIR902c:mirbase
          Length = 134

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 30 tatgatgcagattcttcatct 50
          |||||||||||||||||||||
Sbjct: 35 tatgatgcagattcttcatct 55




>39549_ppt-MIR902c:mirbase
          Length = 134

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 30 tatgatgcagattcttcatct 50
          |||||||||||||||||||||
Sbjct: 35 tatgatgcagattcttcatct 55




>39562_ppt-MIR902i:mirbase
          Length = 120

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                      
Query: 24 ctgggttatgatgcagattcttcatcta 51
          |||| |||||||| ||||||||||||||
Sbjct: 25 ctggattatgatgtagattcttcatcta 52




>39561_ppt-MIR902i:mirbase
          Length = 120

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                      
Query: 24 ctgggttatgatgcagattcttcatcta 51
          |||| |||||||| ||||||||||||||
Sbjct: 25 ctggattatgatgtagattcttcatcta 52