miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>39553_ppt-MIR902e:mirbase
          Length = 133

 Score =  264 bits (133), Expect = 1e-71
 Identities = 133/133 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gacagcgtgccgtctcatttccttccgctagtctatgatgcagattcttcatctgtttcg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gacagcgtgccgtctcatttccttccgctagtctatgatgcagattcttcatctgtttcg 60

                                                                       
Query: 61  tgtgatgcttgtgcacgagtcagacgaaggtctgcatcatagtcaagaggaagcaaatat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tgtgatgcttgtgcacgagtcagacgaaggtctgcatcatagtcaagaggaagcaaatat 120

                        
Query: 121 gaaattcaggagc 133
           |||||||||||||
Sbjct: 121 gaaattcaggagc 133




>39558_ppt-MIR902g:mirbase
          Length = 141

 Score = 79.8 bits (40), Expect = 5e-16
 Identities = 43/44 (97%)
 Strand = Plus / Plus

                                                      
Query: 15 tcatttccttccgctagtctatgatgcagattcttcatctgttt 58
          |||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 15 tcattttcttccgctagtctatgatgcagattcttcatctgttt 58



 Score = 63.9 bits (32), Expect = 3e-11
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                           
Query: 81  cagacgaaggtctgcatcatagtcaagaggaa 112
           ||||||||||||||||||||||||||||||||
Sbjct: 89  cagacgaaggtctgcatcatagtcaagaggaa 120




>39557_ppt-MIR902g:mirbase
          Length = 141

 Score = 79.8 bits (40), Expect = 5e-16
 Identities = 43/44 (97%)
 Strand = Plus / Plus

                                                      
Query: 15 tcatttccttccgctagtctatgatgcagattcttcatctgttt 58
          |||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 15 tcattttcttccgctagtctatgatgcagattcttcatctgttt 58



 Score = 63.9 bits (32), Expect = 3e-11
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                           
Query: 81  cagacgaaggtctgcatcatagtcaagaggaa 112
           ||||||||||||||||||||||||||||||||
Sbjct: 89  cagacgaaggtctgcatcatagtcaagaggaa 120




>39548_ppt-MIR902b:mirbase
          Length = 223

 Score = 67.9 bits (34), Expect = 2e-12
 Identities = 37/38 (97%)
 Strand = Plus / Plus

                                                 
Query: 81  cagacgaaggtctgcatcatagtcaagaggaagcaaat 118
           |||||||||||||||||||||| |||||||||||||||
Sbjct: 148 cagacgaaggtctgcatcatagccaagaggaagcaaat 185



 Score = 65.9 bits (33), Expect = 7e-12
 Identities = 39/41 (95%)
 Strand = Plus / Plus

                                                    
Query: 18  tttccttccgctagtctatgatgcagattcttcatctgttt 58
           ||||||||| |||| ||||||||||||||||||||||||||
Sbjct: 82  tttccttcctctagcctatgatgcagattcttcatctgttt 122




>39547_ppt-MIR902b:mirbase
          Length = 223

 Score = 67.9 bits (34), Expect = 2e-12
 Identities = 37/38 (97%)
 Strand = Plus / Plus

                                                 
Query: 81  cagacgaaggtctgcatcatagtcaagaggaagcaaat 118
           |||||||||||||||||||||| |||||||||||||||
Sbjct: 148 cagacgaaggtctgcatcatagccaagaggaagcaaat 185



 Score = 65.9 bits (33), Expect = 7e-12
 Identities = 39/41 (95%)
 Strand = Plus / Plus

                                                    
Query: 18  tttccttccgctagtctatgatgcagattcttcatctgttt 58
           ||||||||| |||| ||||||||||||||||||||||||||
Sbjct: 82  tttccttcctctagcctatgatgcagattcttcatctgttt 122




>39550_ppt-MIR902c:mirbase
          Length = 134

 Score = 56.0 bits (28), Expect = 7e-09
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                   
Query: 81  cagacgaaggtctgcatcatagtcaagaggaagcaaatat 120
           ||||||||||||||||||||||||||| || || ||||||
Sbjct: 82  cagacgaaggtctgcatcatagtcaagggggaggaaatat 121



 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 34 tatgatgcagattcttcatctgtt 57
          ||||||||||||||||||||||||
Sbjct: 35 tatgatgcagattcttcatctgtt 58




>39549_ppt-MIR902c:mirbase
          Length = 134

 Score = 56.0 bits (28), Expect = 7e-09
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                   
Query: 81  cagacgaaggtctgcatcatagtcaagaggaagcaaatat 120
           ||||||||||||||||||||||||||| || || ||||||
Sbjct: 82  cagacgaaggtctgcatcatagtcaagggggaggaaatat 121



 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 34 tatgatgcagattcttcatctgtt 57
          ||||||||||||||||||||||||
Sbjct: 35 tatgatgcagattcttcatctgtt 58




>39546_ppt-MIR902a:mirbase
          Length = 223

 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 81  cagacgaaggtctgcatcatagtcaag 107
           |||||||||||||||||||||| ||||
Sbjct: 148 cagacgaaggtctgcatcatagccaag 174




>39545_ppt-MIR902a:mirbase
          Length = 223

 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 81  cagacgaaggtctgcatcatagtcaag 107
           |||||||||||||||||||||| ||||
Sbjct: 148 cagacgaaggtctgcatcatagccaag 174




>39556_ppt-MIR902f:mirbase
          Length = 123

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 34 tatgatgcagattcttcatctg 55
          ||||||||||||||||||||||
Sbjct: 30 tatgatgcagattcttcatctg 51




>39555_ppt-MIR902f:mirbase
          Length = 123

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 34 tatgatgcagattcttcatctg 55
          ||||||||||||||||||||||
Sbjct: 30 tatgatgcagattcttcatctg 51




>39552_ppt-MIR902d:mirbase
          Length = 129

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                 
Query: 81  cagacgaaggtctgcatcatagtcaagaggaagcaaat 118
           |||| ||||||||||||| ||| | |||||||||||||
Sbjct: 81  cagatgaaggtctgcatcgtagccgagaggaagcaaat 118



 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 34 tatgatgcagattcttcatct 54
          |||||||||||||||||||||
Sbjct: 30 tatgatgcagattcttcatct 50




>39551_ppt-MIR902d:mirbase
          Length = 129

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                 
Query: 81  cagacgaaggtctgcatcatagtcaagaggaagcaaat 118
           |||| ||||||||||||| ||| | |||||||||||||
Sbjct: 81  cagatgaaggtctgcatcgtagccgagaggaagcaaat 118



 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 34 tatgatgcagattcttcatct 54
          |||||||||||||||||||||
Sbjct: 30 tatgatgcagattcttcatct 50