miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>39558_ppt-MIR902g:mirbase
          Length = 141

 Score =  280 bits (141), Expect = 3e-76
 Identities = 141/141 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggtagcaggtttgttcattttcttccgctagtctatgatgcagattcttcatctgtttag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ggtagcaggtttgttcattttcttccgctagtctatgatgcagattcttcatctgtttag 60

                                                                       
Query: 61  ctgaatctgcgtcagtgtttcagtgttacagacgaaggtctgcatcatagtcaagaggaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ctgaatctgcgtcagtgtttcagtgttacagacgaaggtctgcatcatagtcaagaggaa 120

                                
Query: 121 tgaaaatacattatagattat 141
           |||||||||||||||||||||
Sbjct: 121 tgaaaatacattatagattat 141




>39554_ppt-MIR902e:mirbase
          Length = 133

 Score = 79.8 bits (40), Expect = 5e-16
 Identities = 43/44 (97%)
 Strand = Plus / Plus

                                                      
Query: 15 tcattttcttccgctagtctatgatgcagattcttcatctgttt 58
          |||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 15 tcatttccttccgctagtctatgatgcagattcttcatctgttt 58



 Score = 63.9 bits (32), Expect = 3e-11
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                           
Query: 89  cagacgaaggtctgcatcatagtcaagaggaa 120
           ||||||||||||||||||||||||||||||||
Sbjct: 81  cagacgaaggtctgcatcatagtcaagaggaa 112




>39553_ppt-MIR902e:mirbase
          Length = 133

 Score = 79.8 bits (40), Expect = 5e-16
 Identities = 43/44 (97%)
 Strand = Plus / Plus

                                                      
Query: 15 tcattttcttccgctagtctatgatgcagattcttcatctgttt 58
          |||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 15 tcatttccttccgctagtctatgatgcagattcttcatctgttt 58



 Score = 63.9 bits (32), Expect = 3e-11
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                           
Query: 89  cagacgaaggtctgcatcatagtcaagaggaa 120
           ||||||||||||||||||||||||||||||||
Sbjct: 81  cagacgaaggtctgcatcatagtcaagaggaa 112




>39548_ppt-MIR902b:mirbase
          Length = 223

 Score = 58.0 bits (29), Expect = 2e-09
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                                
Query: 22  cttccgctagtctatgatgcagattcttcatctgttt 58
           ||||| |||| ||||||||||||||||||||||||||
Sbjct: 86  cttcctctagcctatgatgcagattcttcatctgttt 122



 Score = 58.0 bits (29), Expect = 2e-09
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                            
Query: 88  acagacgaaggtctgcatcatagtcaagaggaa 120
           ||||||||||||||||||||||| |||||||||
Sbjct: 147 acagacgaaggtctgcatcatagccaagaggaa 179




>39547_ppt-MIR902b:mirbase
          Length = 223

 Score = 58.0 bits (29), Expect = 2e-09
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                                
Query: 22  cttccgctagtctatgatgcagattcttcatctgttt 58
           ||||| |||| ||||||||||||||||||||||||||
Sbjct: 86  cttcctctagcctatgatgcagattcttcatctgttt 122



 Score = 58.0 bits (29), Expect = 2e-09
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                            
Query: 88  acagacgaaggtctgcatcatagtcaagaggaa 120
           ||||||||||||||||||||||| |||||||||
Sbjct: 147 acagacgaaggtctgcatcatagccaagaggaa 179




>39550_ppt-MIR902c:mirbase
          Length = 134

 Score = 54.0 bits (27), Expect = 3e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 89  cagacgaaggtctgcatcatagtcaag 115
           |||||||||||||||||||||||||||
Sbjct: 82  cagacgaaggtctgcatcatagtcaag 108



 Score = 50.1 bits (25), Expect = 4e-07
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                           
Query: 34 tatgatgcagattcttcatctgtttagctgaat 66
          |||||||||||||||||||||||| | ||||||
Sbjct: 35 tatgatgcagattcttcatctgttgaactgaat 67




>39549_ppt-MIR902c:mirbase
          Length = 134

 Score = 54.0 bits (27), Expect = 3e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 89  cagacgaaggtctgcatcatagtcaag 115
           |||||||||||||||||||||||||||
Sbjct: 82  cagacgaaggtctgcatcatagtcaag 108



 Score = 50.1 bits (25), Expect = 4e-07
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                           
Query: 34 tatgatgcagattcttcatctgtttagctgaat 66
          |||||||||||||||||||||||| | ||||||
Sbjct: 35 tatgatgcagattcttcatctgttgaactgaat 67




>39546_ppt-MIR902a:mirbase
          Length = 223

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 88  acagacgaaggtctgcatcatagtcaag 115
           ||||||||||||||||||||||| ||||
Sbjct: 147 acagacgaaggtctgcatcatagccaag 174




>39545_ppt-MIR902a:mirbase
          Length = 223

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 88  acagacgaaggtctgcatcatagtcaag 115
           ||||||||||||||||||||||| ||||
Sbjct: 147 acagacgaaggtctgcatcatagccaag 174




>39556_ppt-MIR902f:mirbase
          Length = 123

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 34 tatgatgcagattcttcatctg 55
          ||||||||||||||||||||||
Sbjct: 30 tatgatgcagattcttcatctg 51




>39555_ppt-MIR902f:mirbase
          Length = 123

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 34 tatgatgcagattcttcatctg 55
          ||||||||||||||||||||||
Sbjct: 30 tatgatgcagattcttcatctg 51




>39552_ppt-MIR902d:mirbase
          Length = 129

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 34 tatgatgcagattcttcatct 54
          |||||||||||||||||||||
Sbjct: 30 tatgatgcagattcttcatct 50




>39551_ppt-MIR902d:mirbase
          Length = 129

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 34 tatgatgcagattcttcatct 54
          |||||||||||||||||||||
Sbjct: 30 tatgatgcagattcttcatct 50