miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>40154_ath-MIR833:mirbase
Length = 187
Score = 371 bits (187), Expect = e-103
Identities = 187/187 (100%)
Strand = Plus / Plus
Query: 1 ggacgtagatggtactcttacagatggtgatcgtgaaaacaaacggaggagtttgtttgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggacgtagatggtactcttacagatggtgatcgtgaaaacaaacggaggagtttgtttgt 60
Query: 61 tgtactcggtctagttcaaaccaaaacatctttgcaaatatgtatggtttgagctagacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgtactcggtctagttcaaaccaaaacatctttgcaaatatgtatggtttgagctagacc 120
Query: 121 gatgtcaacaaacaagctgcttcgtttgtattcaccatcaacatctttaagaaacgctgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gatgtcaacaaacaagctgcttcgtttgtattcaccatcaacatctttaagaaacgctgc 180
Query: 181 accactc 187
|||||||
Sbjct: 181 accactc 187
>39914_aly-MIR833:mirbase
Length = 431
Score = 121 bits (61), Expect = 2e-28
Identities = 70/73 (95%)
Strand = Plus / Plus
Query: 98 atatgtatggtttgagctagaccgatgtcaacaaacaagctgcttcgtttgtattcacca 157
|||||| |||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 317 atatgtttggtttgaactagaccgatgtcaacaaacaagctgcttcgtttctattcacca 376
Query: 158 tcaacatctttaa 170
|||||||||||||
Sbjct: 377 tcaacatctttaa 389
Score = 91.7 bits (46), Expect = 2e-19
Identities = 77/86 (89%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 9 atggtactcttacagatggtgatcgtgaaaacaaacggaggagtttgtttgt-tgtactc 67
|||||||||||||| |||||||| ||||||| ||| |||| || ||||| || || ||||
Sbjct: 33 atggtactcttacaaatggtgatggtgaaaagaaaaggagcagcttgttagtctgaactc 92
Query: 68 ggtctagttcaaaccaaaacatcttt 93
||||||||||||||||||||||||||
Sbjct: 93 ggtctagttcaaaccaaaacatcttt 118
Score = 50.1 bits (25), Expect = 6e-07
Identities = 70/85 (82%)
Strand = Plus / Minus
Query: 1 ggacgtagatggtactcttacagatggtgatcgtgaaaacaaacggaggagtttgtttgt 60
|||||| |||||| | ||| ||||| |||| ||||| | ||||| || || ||||||||
Sbjct: 406 ggacgtcgatggtgcaattaaagatgttgatggtgaatagaaacgaagcagcttgtttgt 347
Query: 61 tgtactcggtctagttcaaaccaaa 85
|| ||||||||||||||||||||
Sbjct: 346 tgacatcggtctagttcaaaccaaa 322
>39913_aly-MIR833:mirbase
Length = 431
Score = 121 bits (61), Expect = 2e-28
Identities = 70/73 (95%)
Strand = Plus / Plus
Query: 98 atatgtatggtttgagctagaccgatgtcaacaaacaagctgcttcgtttgtattcacca 157
|||||| |||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 317 atatgtttggtttgaactagaccgatgtcaacaaacaagctgcttcgtttctattcacca 376
Query: 158 tcaacatctttaa 170
|||||||||||||
Sbjct: 377 tcaacatctttaa 389
Score = 91.7 bits (46), Expect = 2e-19
Identities = 77/86 (89%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 9 atggtactcttacagatggtgatcgtgaaaacaaacggaggagtttgtttgt-tgtactc 67
|||||||||||||| |||||||| ||||||| ||| |||| || ||||| || || ||||
Sbjct: 33 atggtactcttacaaatggtgatggtgaaaagaaaaggagcagcttgttagtctgaactc 92
Query: 68 ggtctagttcaaaccaaaacatcttt 93
||||||||||||||||||||||||||
Sbjct: 93 ggtctagttcaaaccaaaacatcttt 118
Score = 50.1 bits (25), Expect = 6e-07
Identities = 70/85 (82%)
Strand = Plus / Minus
Query: 1 ggacgtagatggtactcttacagatggtgatcgtgaaaacaaacggaggagtttgtttgt 60
|||||| |||||| | ||| ||||| |||| ||||| | ||||| || || ||||||||
Sbjct: 406 ggacgtcgatggtgcaattaaagatgttgatggtgaatagaaacgaagcagcttgtttgt 347
Query: 61 tgtactcggtctagttcaaaccaaa 85
|| ||||||||||||||||||||
Sbjct: 346 tgacatcggtctagttcaaaccaaa 322
