miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>40159_ath-MIR837:mirbase
Length = 184
Score = 323 bits (163), Expect = 3e-89
Identities = 177/184 (96%)
Strand = Plus / Plus
Query: 1 tttttgataaatacttttgtttgcttacaagtataaagtcatcatgnnnnnnncatcagt 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1 tttttgataaatacttttgtttgcttacaagtataaagtcatcatgtttttttcatcagt 60
Query: 61 ttcttgttcgtttcaaaattatgatttttgtttacttacactcataatcttgaaacgaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttcttgttcgtttcaaaattatgatttttgtttacttacactcataatcttgaaacgaac 120
Query: 121 aaaaaactgatggaaaaacatgaggactttatacttgtaaataaataaaaatatttatta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aaaaaactgatggaaaaacatgaggactttatacttgtaaataaataaaaatatttatta 180
Query: 181 gaaa 184
||||
Sbjct: 181 gaaa 184
Score = 75.8 bits (38), Expect = 1e-14
Identities = 69/78 (88%), Gaps = 1/78 (1%)
Strand = Plus / Minus
Query: 102 tcataatcttgaaacgaacaaaaaactgatggaaaaa-catgaggactttatacttgtaa 160
||||||| ||||||||||||| ||||||||| ||||| ||||| ||||||||||||||||
Sbjct: 84 tcataattttgaaacgaacaagaaactgatgaaaaaaacatgatgactttatacttgtaa 25
Query: 161 ataaataaaaatatttat 178
||| |||| |||||||
Sbjct: 24 gcaaacaaaagtatttat 7
>39919_aly-MIR837:mirbase
Length = 119
Score = 125 bits (63), Expect = 1e-29
Identities = 88/95 (92%), Gaps = 1/95 (1%)
Strand = Plus / Plus
Query: 59 gtttcttgttcgtttcaaaattatgatttttgtttacttacactcataatcttgaaacga 118
|||||||||| |||||| ||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 26 gtttcttgtttttttcaagattatgatttttgtttaattacaatcataatcttgaaacga 85
Query: 119 acaaaaaactgatggaaaaacatgaggactttata 153
|||| |||||||| |||||||||||||||||||||
Sbjct: 86 acaagaaactgat-gaaaaacatgaggactttata 119
Score = 58.0 bits (29), Expect = 2e-09
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 54 catcagtttcttgttcgtttcaaaattatgatt 86
||||||||||||||||||||||| |||||||||
Sbjct: 99 catcagtttcttgttcgtttcaagattatgatt 67
>39918_aly-MIR837:mirbase
Length = 119
Score = 125 bits (63), Expect = 1e-29
Identities = 88/95 (92%), Gaps = 1/95 (1%)
Strand = Plus / Plus
Query: 59 gtttcttgttcgtttcaaaattatgatttttgtttacttacactcataatcttgaaacga 118
|||||||||| |||||| ||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 26 gtttcttgtttttttcaagattatgatttttgtttaattacaatcataatcttgaaacga 85
Query: 119 acaaaaaactgatggaaaaacatgaggactttata 153
|||| |||||||| |||||||||||||||||||||
Sbjct: 86 acaagaaactgat-gaaaaacatgaggactttata 119
Score = 58.0 bits (29), Expect = 2e-09
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 54 catcagtttcttgttcgtttcaaaattatgatt 86
||||||||||||||||||||||| |||||||||
Sbjct: 99 catcagtttcttgttcgtttcaagattatgatt 67
