miRNEST 2.0, an integrative microRNA resource :: BLAST
>40044_ath-MIR168b:mirbase
Length = 124
Score = 101 bits (51), Expect = 1e-22
Identities = 75/83 (90%)
Strand = Plus / Plus
Query: 4 cggcggcctctgactcgcttggtgcaggtcgggaactgattggctgacaccgccacgtgg 63
|||||| ||| || |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 5 cggcggtctcggattcgcttggtgcaggtcgggaactgattggctgacaccgacacgtgt 64
Query: 64 ctttccatggttggcttgtgagc 86
||| ||||||||| ||||||||
Sbjct: 65 cttgtcatggttggtttgtgagc 87
>41101_tcc-MIR168:mirbase
Length = 167
Score = 67.9 bits (34), Expect = 2e-12
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 4 cggcggcctctgactcgcttggtgcaggtcgggaactgattggctg 49
|||||| |||| | ||||||||||||||||||||||||||||||||
Sbjct: 7 cggcggtctctaattcgcttggtgcaggtcgggaactgattggctg 52
>40043_ath-MIR168a:mirbase
Length = 138
Score = 67.9 bits (34), Expect = 2e-12
Identities = 90/107 (84%), Gaps = 5/107 (4%)
Strand = Plus / Plus
Query: 18 tcgcttggtgcaggtcgggaactgatt-ggctgacaccgccacgtggcttt----ccatg 72
|||||||||||||||||||||| ||| ||||||||| ||| |||| |||| || |
Sbjct: 18 tcgcttggtgcaggtcgggaaccaattcggctgacacagcctcgtgacttttaaaccttt 77
Query: 73 gttggcttgtgagcagggatcggatcccgccttgtatcaagtgaatc 119
|||| |||||||||||||| ||||||||||||| ||||| ||||||
Sbjct: 78 attggtttgtgagcagggattggatcccgccttgcatcaactgaatc 124
>39832_aly-MIR168a:mirbase
Length = 155
Score = 67.9 bits (34), Expect = 2e-12
Identities = 90/107 (84%), Gaps = 5/107 (4%)
Strand = Plus / Plus
Query: 18 tcgcttggtgcaggtcgggaactgatt-ggctgacaccgccacgtggcttt----ccatg 72
|||||||||||||||||||||| ||| ||||||||| ||| |||| |||| || |
Sbjct: 24 tcgcttggtgcaggtcgggaaccaattcggctgacacagcctcgtgactttaaaaccttt 83
Query: 73 gttggcttgtgagcagggatcggatcccgccttgtatcaagtgaatc 119
|||| |||||||||||||| ||||||||||||| ||||| ||||||
Sbjct: 84 attggtttgtgagcagggattggatcccgccttgcatcaactgaatc 130
>41215_crt-MIR168:mirbase
Length = 201
Score = 65.9 bits (33), Expect = 7e-12
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 4 cggcggcctctgactcgcttggtgcaggtcgggaactgattggct 48
|||||| |||| | |||||||||||||||||||||||||||||||
Sbjct: 7 cggcggtctctaattcgcttggtgcaggtcgggaactgattggct 51
Score = 40.1 bits (20), Expect = 4e-04
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 94 ggatcccgccttgtatcaagtgaatccgagtccgacgtga 133
||||||||||||| ||||| |||||| ||| |||| ||||
Sbjct: 139 ggatcccgccttgcatcaactgaatcggagaccgaggtga 178
>41210_ccl-MIR168:mirbase
Length = 176
Score = 65.9 bits (33), Expect = 7e-12
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 4 cggcggcctctgactcgcttggtgcaggtcgggaactgattggct 48
|||||| |||| | |||||||||||||||||||||||||||||||
Sbjct: 6 cggcggtctctaattcgcttggtgcaggtcgggaactgattggct 50
>39833_aly-MIR168b:mirbase
Length = 176
Score = 65.9 bits (33), Expect = 7e-12
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 4 cggcggcctctgactcgcttggtgcaggtcgggaactgattggctgaca 52
|||||| ||| || ||||||||||||||||||||||||||| |||||||
Sbjct: 29 cggcggtctcggattcgcttggtgcaggtcgggaactgattagctgaca 77
>40355_rco-MIR168:mirbase
Length = 131
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 18 tcgcttggtgcaggtcgggaactgattggct 48
|||||||||||||||||||||||||||||||
Sbjct: 6 tcgcttggtgcaggtcgggaactgattggct 36
>41347_ptc-MIR168a:mirbase
Length = 160
Score = 60.0 bits (30), Expect = 4e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 11 ctctgactcgcttggtgcaggtcgggaactgatt 44
|||||| |||||||||||||||||||||||||||
Sbjct: 4 ctctgattcgcttggtgcaggtcgggaactgatt 37
>41348_ptc-MIR168b:mirbase
Length = 136
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 18 tcgcttggtgcaggtcgggaactgatt 44
|||||||||||||||||||||||||||
Sbjct: 11 tcgcttggtgcaggtcgggaactgatt 37
>42742_zma-MIR168b:mirbase
Length = 104
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 93 cggatcccgccttgtatcaagtgaatc 119
|||||||||||||| ||||||||||||
Sbjct: 62 cggatcccgccttgcatcaagtgaatc 88
>41596_vvi-MIR168:mirbase
Length = 132
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 18 tcgcttggtgcaggtcgggaac 39
||||||||||||||||||||||
Sbjct: 11 tcgcttggtgcaggtcgggaac 32
>40448_gma-MIR168:mirbase
Length = 125
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 18 tcgcttggtgcaggtcgggaac 39
||||||||||||||||||||||
Sbjct: 19 tcgcttggtgcaggtcgggaac 40
>42528_sbi-MIR168:mirbase
Length = 106
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 95 gatcccgccttgtatcaagtgaatccgag 123
|||||||||||| | ||||||||||||||
Sbjct: 66 gatcccgccttgcaccaagtgaatccgag 94
