miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>41093_tcc-MIR164c:mirbase
Length = 112
Score = 61.9 bits (31), Expect = 7e-11
Identities = 74/86 (86%), Gaps = 3/86 (3%)
Strand = Plus / Plus
Query: 1 catgctggagaagcagggcacatgctagatttatcagaatgaaaaacctgag-aattttg 59
||||||||||||||||||||||||||| | |||||| ||||| ||||| |||||||
Sbjct: 16 catgctggagaagcagggcacatgctaaagcaatcaga--caaaaatctgagaaattttg 73
Query: 60 catgtgcctttgttctccagcttgga 85
|||||||| | | |||||||||||||
Sbjct: 74 catgtgccctggctctccagcttgga 99
>41321_ptc-MIR164f:mirbase
Length = 90
Score = 58.0 bits (29), Expect = 1e-09
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 1 catgctggagaagcagggcacatgctagatttatcag 37
||||||||||||||||||||||||||| || ||||||
Sbjct: 6 catgctggagaagcagggcacatgctaaatctatcag 42
>41580_vvi-MIR164b:mirbase
Length = 93
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 catgctggagaagcagggcacatgct 26
||||||||||||||||||||||||||
Sbjct: 6 catgctggagaagcagggcacatgct 31
>40667_mtr-MIR164d:mirbase
Length = 72
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 6 tggagaagcagggcacatgctagattt 32
||||||||||||||||||||| |||||
Sbjct: 6 tggagaagcagggcacatgcttgattt 32
>42504_sbi-MIR164b:mirbase
Length = 111
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 3 tgctggagaagcagggcacatgct 26
||||||||||||||||||| ||||
Sbjct: 18 tgctggagaagcagggcacgtgct 41
>41934_osa-MIR164d:mirbase
Length = 94
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 3 tgctggagaagcagggcacatgct 26
||||||||||||||||||| ||||
Sbjct: 8 tgctggagaagcagggcacgtgct 31
>41739_bdi-MIR164c:mirbase
Length = 138
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 3 tgctggagaagcagggcacatgct 26
||||||||||||||||||| ||||
Sbjct: 31 tgctggagaagcagggcacgtgct 54
>41871_far-MIR164b:mirbase
Length = 102
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 4 gctggagaagcagggcacatgct 26
|||||||||||||||||| ||||
Sbjct: 38 gctggagaagcagggcacttgct 60
>41870_far-MIR164a:mirbase
Length = 102
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 4 gctggagaagcagggcacatgct 26
|||||||||||||||||| ||||
Sbjct: 38 gctggagaagcagggcacttgct 60
>41318_ptc-MIR164c:mirbase
Length = 82
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 3 tgctggagaagcagggcac 21
|||||||||||||||||||
Sbjct: 8 tgctggagaagcagggcac 26
>41316_ptc-MIR164a:mirbase
Length = 85
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 3 tgctggagaagcagggcac 21
|||||||||||||||||||
Sbjct: 8 tgctggagaagcagggcac 26
>40344_rco-MIR164b:mirbase
Length = 104
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 3 tgctggagaagcagggcac 21
|||||||||||||||||||
Sbjct: 3 tgctggagaagcagggcac 21
>40343_rco-MIR164a:mirbase
Length = 78
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 3 tgctggagaagcagggcac 21
|||||||||||||||||||
Sbjct: 3 tgctggagaagcagggcac 21
