miRNEST 2.0, an integrative microRNA resource :: BLAST
>40454_gma-MIR171a:mirbase
Length = 102
Score = 109 bits (55), Expect = 3e-25
Identities = 80/87 (91%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 2 aacgggatattggtccggttcaataagaaaacagtgctcaaaatg-ttatgggccctgct 60
|||||||||||||||||||||||||||||| || ||||||||||| || |||| |||| |
Sbjct: 5 aacgggatattggtccggttcaataagaaagcaatgctcaaaatgtttttgggtcctgtt 64
Query: 61 ttttgattgagccgtgccaatatcacg 87
|||| ||||||||||||||||||||||
Sbjct: 65 ttttcattgagccgtgccaatatcacg 91
>41216_crt-MIR171:mirbase
Length = 201
Score = 105 bits (53), Expect = 5e-24
Identities = 80/89 (89%)
Strand = Plus / Plus
Query: 2 aacgggatattggtccggttcaataagaaaacagtgctcaaaatgttatgggccctgctt 61
|||||||||||||| ||||||||||||||||| |||||||| | || || || | ||||
Sbjct: 99 aacgggatattggtgcggttcaataagaaaacggtgctcaatactttttgagctccgctt 158
Query: 62 tttgattgagccgtgccaatatcacgtgc 90
|||||||||||||||||||||||||||||
Sbjct: 159 tttgattgagccgtgccaatatcacgtgc 187
>41231_csi-MIR171a:mirbase
Length = 97
Score = 95.6 bits (48), Expect = 5e-21
Identities = 78/88 (88%)
Strand = Plus / Plus
Query: 3 acgggatattggtccggttcaataagaaaacagtgctcaaaatgttatgggccctgcttt 62
||||||||||||| ||||||||||||||||| |||||||| | || || || | |||||
Sbjct: 6 acgggatattggtgcggttcaataagaaaacggtgctcaatactttttgagctccgcttt 65
Query: 63 ttgattgagccgtgccaatatcacgtgc 90
|||||||||||| |||||||||||||||
Sbjct: 66 ttgattgagccgcgccaatatcacgtgc 93
>41211_ccl-MIR171:mirbase
Length = 321
Score = 95.6 bits (48), Expect = 5e-21
Identities = 78/88 (88%)
Strand = Plus / Plus
Query: 3 acgggatattggtccggttcaataagaaaacagtgctcaaaatgttatgggccctgcttt 62
||||||||||||| ||||||||||||||||| |||||||| | || || || | |||||
Sbjct: 61 acgggatattggtgcggttcaataagaaaacggtgctcaatactttttgagctccgcttt 120
Query: 63 ttgattgagccgtgccaatatcacgtgc 90
|||||||||||| |||||||||||||||
Sbjct: 121 ttgattgagccgcgccaatatcacgtgc 148
>41624_vvi-MIR171c:mirbase
Length = 103
Score = 79.8 bits (40), Expect = 3e-16
Identities = 77/88 (87%), Gaps = 1/88 (1%)
Strand = Plus / Plus
Query: 3 acgggatattggtccggttcaataagaaaacagtgctcaaaat-gttatgggccctgctt 61
||||||||||||| ||||||||||||||| |||||||| ||| || || | ||| ||
Sbjct: 8 acgggatattggtgcggttcaataagaaagcagtgctcgcaatctttttgagttctggtt 67
Query: 62 tttgattgagccgtgccaatatcacgtg 89
||||||||||||||||||||||||||||
Sbjct: 68 tttgattgagccgtgccaatatcacgtg 95
>40360_rco-MIR171b:mirbase
Length = 91
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 62 tttgattgagccgtgccaatatcacgtgca 91
||||||||||||||||||||||||||||||
Sbjct: 61 tttgattgagccgtgccaatatcacgtgca 90
>41982_osa-MIR171b:mirbase
Length = 100
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 61 ttttgattgagccgtgccaatatcacgt 88
||||||||||||||||||||||||||||
Sbjct: 67 ttttgattgagccgtgccaatatcacgt 94
>40700_mtr-MIR171f:mirbase
Length = 95
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 62 tttgattgagccgtgccaatatcacgtg 89
||||||||||||||||||||||||||||
Sbjct: 65 tttgattgagccgtgccaatatcacgtg 92
>39851_aly-MIR171c:mirbase
Length = 111
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 62 tttgattgagccgtgccaatatcacgtg 89
||||||||||||||||||||||||||||
Sbjct: 72 tttgattgagccgtgccaatatcacgtg 99
>42556_sbi-MIR171k:mirbase
Length = 87
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 62 tttgattgagccgtgccaatatcacgt 88
|||||||||||||||||||||||||||
Sbjct: 60 tttgattgagccgtgccaatatcacgt 86
>41983_osa-MIR171c:mirbase
Length = 99
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 62 tttgattgagccgtgccaatatcacgt 88
|||||||||||||||||||||||||||
Sbjct: 67 tttgattgagccgtgccaatatcacgt 93
>41625_vvi-MIR171d:mirbase
Length = 100
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 62 tttgattgagccgtgccaatatcacgt 88
|||||||||||||||||||||||||||
Sbjct: 65 tttgattgagccgtgccaatatcacgt 91
>41540_sly-MIR171c:mirbase
Length = 121
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 59 ctttttgattgagccgtgccaatatcacgtg 89
|||||||||||||||| ||||||||||||||
Sbjct: 73 ctttttgattgagccgcgccaatatcacgtg 103
>41382_ptc-MIR171b:mirbase
Length = 103
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 62 tttgattgagccgtgccaatatcacgt 88
|||||||||||||||||||||||||||
Sbjct: 69 tttgattgagccgtgccaatatcacgt 95
>41381_ptc-MIR171a:mirbase
Length = 104
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 62 tttgattgagccgtgccaatatcacgt 88
|||||||||||||||||||||||||||
Sbjct: 70 tttgattgagccgtgccaatatcacgt 96
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 aaacgggatattggtccggttcaataagaaa 31
||||||||||||||| ||||||||| |||||
Sbjct: 8 aaacgggatattggtacggttcaatcagaaa 38
>41121_tcc-MIR171f:mirbase
Length = 117
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 62 tttgattgagccgtgccaatatcacgt 88
|||||||||||||||||||||||||||
Sbjct: 75 tttgattgagccgtgccaatatcacgt 101
>41119_tcc-MIR171d:mirbase
Length = 117
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 62 tttgattgagccgtgccaatatcacgt 88
|||||||||||||||||||||||||||
Sbjct: 75 tttgattgagccgtgccaatatcacgt 101
>42770_zma-MIR171j:mirbase
Length = 129
Score = 52.0 bits (26), Expect = 7e-08
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 51 gggccctgctttttgattgagccgtgccaatatcacgt 88
|||| ||||| | |||||||||||||||||||||||||
Sbjct: 77 gggctctgctctctgattgagccgtgccaatatcacgt 114
>42762_zma-MIR171b:mirbase
Length = 85
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 62 tttgattgagccgtgccaatatcacg 87
||||||||||||||||||||||||||
Sbjct: 60 tttgattgagccgtgccaatatcacg 85
>42547_sbi-MIR171b:mirbase
Length = 132
Score = 52.0 bits (26), Expect = 7e-08
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 51 gggccctgctttttgattgagccgtgccaatatcacgt 88
|||| ||||| | |||||||||||||||||||||||||
Sbjct: 80 gggctctgctctctgattgagccgtgccaatatcacgt 117
>40318_bra-MIR171a:mirbase
Length = 85
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 62 tttgattgagccgtgccaatatcacg 87
||||||||||||||||||||||||||
Sbjct: 60 tttgattgagccgtgccaatatcacg 85
>40305_bol-MIR171a:mirbase
Length = 96
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 62 tttgattgagccgtgccaatatcacg 87
||||||||||||||||||||||||||
Sbjct: 66 tttgattgagccgtgccaatatcacg 91
>40289_bna-MIR171e:mirbase
Length = 92
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 62 tttgattgagccgtgccaatatcacg 87
||||||||||||||||||||||||||
Sbjct: 65 tttgattgagccgtgccaatatcacg 90
>40288_bna-MIR171d:mirbase
Length = 96
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 62 tttgattgagccgtgccaatatcacg 87
||||||||||||||||||||||||||
Sbjct: 66 tttgattgagccgtgccaatatcacg 91
>40062_ath-MIR171c:mirbase
Length = 116
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 62 tttgattgagccgtgccaatatcacg 87
||||||||||||||||||||||||||
Sbjct: 85 tttgattgagccgtgccaatatcacg 110
>42546_sbi-MIR171a:mirbase
Length = 161
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 62 tttgattgagccgtgccaatatcac 86
|||||||||||||||||||||||||
Sbjct: 120 tttgattgagccgtgccaatatcac 144
>41766_bdi-MIR171c:mirbase
Length = 86
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 62 tttgattgagccgtgccaatatcac 86
|||||||||||||||||||||||||
Sbjct: 62 tttgattgagccgtgccaatatcac 86
>40457_gma-MIR171c:mirbase
Length = 104
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 62 tttgattgagccgtgccaatatcac 86
|||||||||||||||||||||||||
Sbjct: 70 tttgattgagccgtgccaatatcac 94
>42769_zma-MIR171i:mirbase
Length = 104
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 63 ttgattgagccgtgccaatatcac 86
||||||||||||||||||||||||
Sbjct: 64 ttgattgagccgtgccaatatcac 87
>42766_zma-MIR171f:mirbase
Length = 155
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 63 ttgattgagccgtgccaatatcac 86
||||||||||||||||||||||||
Sbjct: 114 ttgattgagccgtgccaatatcac 137
>41180_aqc-MIR171d:mirbase
Length = 106
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 61 ttttgattgagccgtgccaatatc 84
||||||||||||||||||||||||
Sbjct: 81 ttttgattgagccgtgccaatatc 104
>41120_tcc-MIR171e:mirbase
Length = 161
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 61 ttttgattgagccgtgccaatatc 84
||||||||||||||||||||||||
Sbjct: 118 ttttgattgagccgtgccaatatc 141
>40364_rco-MIR171f:mirbase
Length = 111
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 61 ttttgattgagccgtgccaatatc 84
||||||||||||||||||||||||
Sbjct: 83 ttttgattgagccgtgccaatatc 106
>42763_zma-MIR171c:mirbase
Length = 118
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 62 tttgattgagccgtgccaatatcacgt 88
||||| |||||||||||||||||||||
Sbjct: 77 tttgactgagccgtgccaatatcacgt 103
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 3 acgggatattggtccggttcaataagaaa 31
||||||||||||| ||||||||| |||||
Sbjct: 17 acgggatattggtgcggttcaatcagaaa 45
>42641_tae-MIR171b:mirbase
Length = 138
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 65 gattgagccgtgccaatatcacg 87
|||||||||||||||||||||||
Sbjct: 90 gattgagccgtgccaatatcacg 112
>41986_osa-MIR171f:mirbase
Length = 127
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 64 tgattgagccgtgccaatatcac 86
|||||||||||||||||||||||
Sbjct: 97 tgattgagccgtgccaatatcac 119
>41539_sly-MIR171b:mirbase
Length = 86
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 66 attgagccgtgccaatatcacgt 88
|||||||||||||||||||||||
Sbjct: 64 attgagccgtgccaatatcacgt 86
>41538_sly-MIR171a:mirbase
Length = 122
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 62 tttgattgagccgtgccaatatc 84
|||||||||||||||||||||||
Sbjct: 85 tttgattgagccgtgccaatatc 107
>41389_ptc-MIR171i:mirbase
Length = 129
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 62 tttgattgagccgtgccaatatc 84
|||||||||||||||||||||||
Sbjct: 98 tttgattgagccgtgccaatatc 120
>41388_ptc-MIR171h:mirbase
Length = 100
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 64 tgattgagccgtgccaatatcac 86
|||||||||||||||||||||||
Sbjct: 71 tgattgagccgtgccaatatcac 93
>41387_ptc-MIR171g:mirbase
Length = 100
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 64 tgattgagccgtgccaatatcac 86
|||||||||||||||||||||||
Sbjct: 71 tgattgagccgtgccaatatcac 93
>41182_aqc-MIR171f:mirbase
Length = 88
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 66 attgagccgtgccaatatcacgt 88
|||||||||||||||||||||||
Sbjct: 64 attgagccgtgccaatatcacgt 86
>41181_aqc-MIR171e:mirbase
Length = 102
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 62 tttgattgagccgtgccaatatc 84
|||||||||||||||||||||||
Sbjct: 23 tttgattgagccgtgccaatatc 1
>41178_aqc-MIR171b:mirbase
Length = 77
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 64 tgattgagccgtgccaatatcac 86
|||||||||||||||||||||||
Sbjct: 55 tgattgagccgtgccaatatcac 77
>41177_aqc-MIR171a:mirbase
Length = 102
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 62 tttgattgagccgtgccaatatc 84
|||||||||||||||||||||||
Sbjct: 78 tttgattgagccgtgccaatatc 100
>41122_tcc-MIR171g:mirbase
Length = 115
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 64 tgattgagccgtgccaatatcac 86
|||||||||||||||||||||||
Sbjct: 75 tgattgagccgtgccaatatcac 97
>40701_mtr-MIR171g:mirbase
Length = 105
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 62 tttgattgagccgtgccaatatc 84
|||||||||||||||||||||||
Sbjct: 78 tttgattgagccgtgccaatatc 100
>40698_mtr-MIR171d:mirbase
Length = 105
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 62 tttgattgagccgtgccaatatc 84
|||||||||||||||||||||||
Sbjct: 78 tttgattgagccgtgccaatatc 100
>40697_mtr-MIR171c:mirbase
Length = 105
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 61 ttttgattgagccgtgccaatat 83
|||||||||||||||||||||||
Sbjct: 77 ttttgattgagccgtgccaatat 99
>40362_rco-MIR171d:mirbase
Length = 124
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 62 tttgattgagccgtgccaatatc 84
|||||||||||||||||||||||
Sbjct: 97 tttgattgagccgtgccaatatc 119
>40321_bra-MIR171d:mirbase
Length = 101
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 65 gattgagccgtgccaatatcacg 87
|||||||||||||||||||||||
Sbjct: 71 gattgagccgtgccaatatcacg 93
>40320_bra-MIR171c:mirbase
Length = 88
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 65 gattgagccgtgccaatatcacg 87
|||||||||||||||||||||||
Sbjct: 65 gattgagccgtgccaatatcacg 87
>40319_bra-MIR171b:mirbase
Length = 104
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 65 gattgagccgtgccaatatcacg 87
|||||||||||||||||||||||
Sbjct: 72 gattgagccgtgccaatatcacg 94
>40287_bna-MIR171c:mirbase
Length = 88
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 65 gattgagccgtgccaatatcacg 87
|||||||||||||||||||||||
Sbjct: 65 gattgagccgtgccaatatcacg 87
>40286_bna-MIR171b:mirbase
Length = 101
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 65 gattgagccgtgccaatatcacg 87
|||||||||||||||||||||||
Sbjct: 71 gattgagccgtgccaatatcacg 93
>40285_bna-MIR171a:mirbase
Length = 104
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 65 gattgagccgtgccaatatcacg 87
|||||||||||||||||||||||
Sbjct: 72 gattgagccgtgccaatatcacg 94
>40061_ath-MIR171b:mirbase
Length = 117
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 65 gattgagccgtgccaatatcacg 87
|||||||||||||||||||||||
Sbjct: 76 gattgagccgtgccaatatcacg 98
>39850_aly-MIR171b:mirbase
Length = 137
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 65 gattgagccgtgccaatatcacg 87
|||||||||||||||||||||||
Sbjct: 87 gattgagccgtgccaatatcacg 109
>41630_vvi-MIR171i:mirbase
Length = 103
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 64 tgattgagccgtgccaatatca 85
||||||||||||||||||||||
Sbjct: 69 tgattgagccgtgccaatatca 90
>41622_vvi-MIR171a:mirbase
Length = 99
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 64 tgattgagccgtgccaatatca 85
||||||||||||||||||||||
Sbjct: 68 tgattgagccgtgccaatatca 89
>39736_smo-MIR171a:mirbase
Length = 135
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 65 gattgagccgtgccaatatcac 86
||||||||||||||||||||||
Sbjct: 103 gattgagccgtgccaatatcac 124
