miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>41118_tcc-MIR171c:mirbase
Length = 123
Score = 111 bits (56), Expect = 8e-26
Identities = 84/93 (90%), Gaps = 4/93 (4%)
Strand = Plus / Plus
Query: 1 agcgatgttggtgaggttcaatccgaagacggatttac----acattctgttgtaaagga 56
|||||||||||||||||||||||||||||||||||||| ||||| || ||||| |
Sbjct: 16 agcgatgttggtgaggttcaatccgaagacggatttacgcatgcattcagtcgtaaaata 75
Query: 57 cgatctcagattgagccgcgccaatatcacttt 89
|||||||||||||||||||||||||||||||||
Sbjct: 76 cgatctcagattgagccgcgccaatatcacttt 108
>40699_mtr-MIR171e:mirbase
Length = 93
Score = 111 bits (56), Expect = 8e-26
Identities = 83/91 (91%), Gaps = 2/91 (2%)
Strand = Plus / Plus
Query: 1 agcgatgttggtgaggttcaatccgaagacggatttaca--cattctgttgtaaaggacg 58
||||||||||||||||||||||||||||||||||||||| || |||||||| |||
Sbjct: 3 agcgatgttggtgaggttcaatccgaagacggatttacatgtatagagttgtaaaatacg 62
Query: 59 atctcagattgagccgcgccaatatcacttt 89
|||||||||||||||||||||||||||||||
Sbjct: 63 atctcagattgagccgcgccaatatcacttt 93
>41541_sly-MIR171d:mirbase
Length = 112
Score = 103 bits (52), Expect = 2e-23
Identities = 79/88 (89%)
Strand = Plus / Plus
Query: 1 agcgatgttggtgaggttcaatccgaagacggatttacacattctgttgtaaaggacgat 60
||||||||||||||||||||||||||||||| ||||| | | | | |||||| |||||
Sbjct: 9 agcgatgttggtgaggttcaatccgaagacgaatttatgcttattttcgtaaagaacgat 68
Query: 61 ctcagattgagccgcgccaatatcactt 88
||||||||||||||||||||||||||||
Sbjct: 69 ctcagattgagccgcgccaatatcactt 96
>41383_ptc-MIR171c:mirbase
Length = 104
Score = 95.6 bits (48), Expect = 5e-21
Identities = 82/93 (88%), Gaps = 4/93 (4%)
Strand = Plus / Plus
Query: 1 agcgatgttggtgaggttcaatccgaagacggatttacac----attctgttgtaaagga 56
|||||||||||||||||||||||||||||||||||||||| | ||||||| |
Sbjct: 8 agcgatgttggtgaggttcaatccgaagacggatttacacgtgaaagtaattgtaaaata 67
Query: 57 cgatctcagattgagccgcgccaatatcacttt 89
|||||||||||||||||||||||||||||||||
Sbjct: 68 cgatctcagattgagccgcgccaatatcacttt 100
>41626_vvi-MIR171e:mirbase
Length = 103
Score = 91.7 bits (46), Expect = 8e-20
Identities = 79/89 (88%), Gaps = 2/89 (2%)
Strand = Plus / Plus
Query: 1 agcgatgttggtgaggttcaatccgaagacggatttacacattctgttgtaaaggacgat 60
|||||||||||||||||||||||||||||||||||||| | | |||||| |||||
Sbjct: 9 agcgatgttggtgaggttcaatccgaagacggatttacgaa--gagccgtaaagaacgat 66
Query: 61 ctcagattgagccgcgccaatatcacttt 89
||| |||||||||||||||||||||||||
Sbjct: 67 ctctgattgagccgcgccaatatcacttt 95
>41384_ptc-MIR171d:mirbase
Length = 100
Score = 81.8 bits (41), Expect = 8e-17
Identities = 77/89 (86%)
Strand = Plus / Plus
Query: 1 agcgatgttggtgaggttcaatccgaagacggatttacacattctgttgtaaaggacgat 60
|||||||||||||||||||||||||||||| ||||||||| ||||| ||||
Sbjct: 8 agcgatgttggtgaggttcaatccgaagacagatttacacgagtgaaagtaaaatccgat 67
Query: 61 ctcagattgagccgcgccaatatcacttt 89
|||||||||||||||||||||||||||||
Sbjct: 68 ctcagattgagccgcgccaatatcacttt 96
>41627_vvi-MIR171f:mirbase
Length = 103
Score = 63.9 bits (32), Expect = 2e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 58 gatctcagattgagccgcgccaatatcacttt 89
||||||||||||||||||||||||||||||||
Sbjct: 64 gatctcagattgagccgcgccaatatcacttt 95
>41117_tcc-MIR171b:mirbase
Length = 120
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 62 tcagattgagccgcgccaatatcacttt 89
||||||||||||||||||||||||||||
Sbjct: 78 tcagattgagccgcgccaatatcacttt 105
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 2 gcgatgttggtgaggttcaatccgaaga 29
|||||||||||||||||||||| |||||
Sbjct: 19 gcgatgttggtgaggttcaatctgaaga 46
>39479_ppt-MIR171b:mirbase
Length = 92
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 61 ctcagattgagccgcgccaatatcac 86
||||||||||||||||||||||||||
Sbjct: 61 ctcagattgagccgcgccaatatcac 86
>39478_ppt-MIR171a:mirbase
Length = 91
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 62 tcagattgagccgcgccaatatcac 86
|||||||||||||||||||||||||
Sbjct: 61 tcagattgagccgcgccaatatcac 85
>42555_sbi-MIR171j:mirbase
Length = 108
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 65 gattgagccgcgccaatatcactt 88
||||||||||||||||||||||||
Sbjct: 84 gattgagccgcgccaatatcactt 107
>39739_smo-MIR171d:mirbase
Length = 103
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 60 tctcagattgagccgcgccaatatcac 86
||||| |||||||||||||||||||||
Sbjct: 65 tctcaaattgagccgcgccaatatcac 91
>41981_osa-MIR171a:mirbase
Length = 96
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 agcgatgttggtgaggttcaatccga 26
|||||| |||||||||||||||||||
Sbjct: 7 agcgatattggtgaggttcaatccga 32
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 65 gattgagccgcgccaatatc 84
||||||||||||||||||||
Sbjct: 68 gattgagccgcgccaatatc 87
>41540_sly-MIR171c:mirbase
Length = 121
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 65 gattgagccgcgccaatatcac 86
||||||||||||||||||||||
Sbjct: 79 gattgagccgcgccaatatcac 100
>41231_csi-MIR171a:mirbase
Length = 97
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 65 gattgagccgcgccaatatcac 86
||||||||||||||||||||||
Sbjct: 68 gattgagccgcgccaatatcac 89
>41211_ccl-MIR171:mirbase
Length = 321
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 65 gattgagccgcgccaatatcac 86
||||||||||||||||||||||
Sbjct: 123 gattgagccgcgccaatatcac 144
>42774_zma-MIR171n:mirbase
Length = 78
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 65 gattgagccgcgccaatatc 84
||||||||||||||||||||
Sbjct: 58 gattgagccgcgccaatatc 77
>42761_zma-MIR171a:mirbase
Length = 99
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 65 gattgagccgcgccaatatc 84
||||||||||||||||||||
Sbjct: 80 gattgagccgcgccaatatc 99
>42552_sbi-MIR171g:mirbase
Length = 77
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 65 gattgagccgcgccaatatc 84
||||||||||||||||||||
Sbjct: 58 gattgagccgcgccaatatc 77
>41764_bdi-MIR171a:mirbase
Length = 120
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 65 gattgagccgcgccaatatc 84
||||||||||||||||||||
Sbjct: 51 gattgagccgcgccaatatc 70
>41391_ptc-MIR171k:mirbase
Length = 78
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 65 gattgagccgcgccaatatc 84
||||||||||||||||||||
Sbjct: 59 gattgagccgcgccaatatc 78
>41116_tcc-MIR171a:mirbase
Length = 119
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 65 gattgagccgcgccaatatc 84
||||||||||||||||||||
Sbjct: 80 gattgagccgcgccaatatc 99
>40322_bra-MIR171e:mirbase
Length = 119
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 65 gattgagccgcgccaatatc 84
||||||||||||||||||||
Sbjct: 85 gattgagccgcgccaatatc 104
>40291_bna-MIR171g:mirbase
Length = 80
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 65 gattgagccgcgccaatatc 84
||||||||||||||||||||
Sbjct: 59 gattgagccgcgccaatatc 78
>40290_bna-MIR171f:mirbase
Length = 119
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 65 gattgagccgcgccaatatc 84
||||||||||||||||||||
Sbjct: 85 gattgagccgcgccaatatc 104
>40060_ath-MIR171a:mirbase
Length = 123
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 65 gattgagccgcgccaatatc 84
||||||||||||||||||||
Sbjct: 89 gattgagccgcgccaatatc 108
>39849_aly-MIR171a:mirbase
Length = 198
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 65 gattgagccgcgccaatatc 84
||||||||||||||||||||
Sbjct: 131 gattgagccgcgccaatatc 150
>39736_smo-MIR171a:mirbase
Length = 135
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 64 agattgagccgcgccaatatcact 87
||||||||||| ||||||||||||
Sbjct: 102 agattgagccgtgccaatatcact 125
