miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>41246_csi-MIR399a:mirbase
Length = 155
Score = 67.9 bits (34), Expect = 1e-12
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 71 cagtgtgccttctgccaaaggagatttgcccagcaatt 108
||||||||||||||||||||||||||||||| ||||||
Sbjct: 102 cagtgtgccttctgccaaaggagatttgcccggcaatt 139
>41672_vvi-MIR399e:mirbase
Length = 112
Score = 58.0 bits (29), Expect = 1e-09
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 72 agtgtgccttctgccaaaggagatttgcccagcaatt 108
|||||||| ||||||||||||||||||||| ||||||
Sbjct: 71 agtgtgccctctgccaaaggagatttgcccggcaatt 107
>41149_tcc-MIR399d:mirbase
Length = 136
Score = 58.0 bits (29), Expect = 1e-09
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 72 agtgtgccttctgccaaaggagatttgcccagcaatt 108
|||||| ||||||||||||||||||||||| ||||||
Sbjct: 85 agtgtgtcttctgccaaaggagatttgcccggcaatt 121
Score = 52.0 bits (26), Expect = 8e-08
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 1 ttacagggcaaatatctccattggcaggtagccacttt 38
|||||||||||| ||||||||||||||| ||||||||
Sbjct: 18 ttacagggcaaagatctccattggcaggctgccacttt 55
>41147_tcc-MIR399b:mirbase
Length = 135
Score = 56.0 bits (28), Expect = 5e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 73 gtgtgccttctgccaaaggagatttgcccagcaatt 108
||||||| ||||||||||||||||||||| ||||||
Sbjct: 85 gtgtgccctctgccaaaggagatttgcccggcaatt 120
>42594_sbi-MIR399f:mirbase
Length = 120
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 81 tctgccaaaggagatttgcccagcaat 107
|||||||||||||||||||||||||||
Sbjct: 79 tctgccaaaggagatttgcccagcaat 105
>42046_osa-MIR399f:mirbase
Length = 117
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 81 tctgccaaaggagatttgcccagcaat 107
|||||||||||||||||||||||||||
Sbjct: 85 tctgccaaaggagatttgcccagcaat 111
>40737_mtr-MIR399g:mirbase
Length = 104
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 82 ctgccaaaggagatttgcccagcaatt 108
|||||||||||||||||||||||||||
Sbjct: 78 ctgccaaaggagatttgcccagcaatt 104
>42593_sbi-MIR399e:mirbase
Length = 126
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 82 ctgccaaaggagatttgcccagcaat 107
||||||||||||||||||||||||||
Sbjct: 86 ctgccaaaggagatttgcccagcaat 111
>42045_osa-MIR399e:mirbase
Length = 118
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 82 ctgccaaaggagatttgcccagcaat 107
||||||||||||||||||||||||||
Sbjct: 87 ctgccaaaggagatttgcccagcaat 112
>40736_mtr-MIR399f:mirbase
Length = 104
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 72 agtgtgccttctgccaaaggagatttgcccagc 104
||||||| ||||||||||||||||||||||||
Sbjct: 68 agtgtgcaatctgccaaaggagatttgcccagc 100
>40731_mtr-MIR399a:mirbase
Length = 134
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 72 agtgtgccttctgccaaaggagatttgcccagc 104
||||||| ||||||||||||||||||||||||
Sbjct: 84 agtgtgcaatctgccaaaggagatttgcccagc 116
>42047_osa-MIR399g:mirbase
Length = 119
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 81 tctgccaaaggagatttgcccagc 104
||||||||||||||||||||||||
Sbjct: 87 tctgccaaaggagatttgcccagc 110
>41457_ptc-MIR399j:mirbase
Length = 112
Score = 48.1 bits (24), Expect = 1e-06
Identities = 71/83 (85%), Gaps = 4/83 (4%)
Strand = Plus / Plus
Query: 16 ctccattggcaggtagccactttagacatgcatttaaattttgagcattatttaacagtg 75
||||||||||||| ||||||| || |||||||||||||| || | || ||| | ||||
Sbjct: 19 ctccattggcaggcagccactaaag-catgcatttaaattatgcg--ttctttta-agtg 74
Query: 76 tgccttctgccaaaggagatttg 98
|||| ||||||||||||||||||
Sbjct: 75 tgccctctgccaaaggagatttg 97
>41148_tcc-MIR399c:mirbase
Length = 141
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 81 tctgccaaaggagatttgcccagcaatt 108
|||||||| |||||||||||||||||||
Sbjct: 99 tctgccaatggagatttgcccagcaatt 126
>40735_mtr-MIR399e:mirbase
Length = 134
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 81 tctgccaaaggagatttgcccagc 104
||||||||||||||||||||||||
Sbjct: 93 tctgccaaaggagatttgcccagc 116
>40095_ath-MIR399d:mirbase
Length = 100
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 81 tctgccaaaggagatttgcccagcaatt 108
||||||||||||||||||||| ||||||
Sbjct: 68 tctgccaaaggagatttgccccgcaatt 95
>39887_aly-MIR399d:mirbase
Length = 135
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 81 tctgccaaaggagatttgcccagcaatt 108
||||||||||||||||||||| ||||||
Sbjct: 82 tctgccaaaggagatttgccccgcaatt 109
>41448_ptc-MIR399a:mirbase
Length = 120
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 82 ctgccaaaggagatttgcccagcaatt 108
|||||||||||||||||||| ||||||
Sbjct: 90 ctgccaaaggagatttgccccgcaatt 116
>41153_tcc-MIR399h:mirbase
Length = 117
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 82 ctgccaaaggagatttgcccagcaatt 108
|||||||||||||||||||| ||||||
Sbjct: 76 ctgccaaaggagatttgccccgcaatt 102
>39892_aly-MIR399i:mirbase
Length = 127
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 82 ctgccaaaggagatttgcccagcaatt 108
|||||||||||||||||||| ||||||
Sbjct: 91 ctgccaaaggagatttgccccgcaatt 117
>39890_aly-MIR399g:mirbase
Length = 157
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 82 ctgccaaaggagatttgcccagcaatt 108
|||||||||||||||||||| ||||||
Sbjct: 110 ctgccaaaggagatttgccccgcaatt 136
>42048_osa-MIR399h:mirbase
Length = 99
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 82 ctgccaaaggagatttgcccagcaat 107
||||||||||||| ||||||||||||
Sbjct: 68 ctgccaaaggagacttgcccagcaat 93
>41450_ptc-MIR399c:mirbase
Length = 126
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 83 tgccaaaggagatttgcccagcaatt 108
||||||||||||||||||| ||||||
Sbjct: 97 tgccaaaggagatttgcccggcaatt 122
>41449_ptc-MIR399b:mirbase
Length = 126
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 83 tgccaaaggagatttgcccagcaatt 108
||||||||||||||||||| ||||||
Sbjct: 97 tgccaaaggagatttgcccggcaatt 122
>40384_rco-MIR399b:mirbase
Length = 106
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 82 ctgccaaaggagatttgcccagcaat 107
|||||||||||||||||||| |||||
Sbjct: 80 ctgccaaaggagatttgcccggcaat 105
>40299_bna-MIR399:mirbase
Length = 102
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 81 tctgccaaaggagatttgccc 101
|||||||||||||||||||||
Sbjct: 79 tctgccaaaggagatttgccc 99
>40097_ath-MIR399f:mirbase
Length = 118
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 81 tctgccaaaggagatttgccc 101
|||||||||||||||||||||
Sbjct: 86 tctgccaaaggagatttgccc 106
>40092_ath-MIR399a:mirbase
Length = 123
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 81 tctgccaaaggagatttgccc 101
|||||||||||||||||||||
Sbjct: 91 tctgccaaaggagatttgccc 111
>39889_aly-MIR399f:mirbase
Length = 167
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 81 tctgccaaaggagatttgccc 101
|||||||||||||||||||||
Sbjct: 110 tctgccaaaggagatttgccc 130
>39884_aly-MIR399a:mirbase
Length = 162
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 81 tctgccaaaggagatttgccc 101
|||||||||||||||||||||
Sbjct: 111 tctgccaaaggagatttgccc 131
>41674_vvi-MIR399g:mirbase
Length = 113
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 82 ctgccaaaggagatttgccc 101
||||||||||||||||||||
Sbjct: 82 ctgccaaaggagatttgccc 101
>40096_ath-MIR399e:mirbase
Length = 109
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 81 tctgccaaaggagatttgcc 100
||||||||||||||||||||
Sbjct: 77 tctgccaaaggagatttgcc 96
>39888_aly-MIR399e:mirbase
Length = 191
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 81 tctgccaaaggagatttgcc 100
||||||||||||||||||||
Sbjct: 116 tctgccaaaggagatttgcc 135
