miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>40389_rco-MIR403a:mirbase
Length = 95
Score = 65.9 bits (33), Expect = 5e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 62 atccaatggtgttagattcacgcacaaactcgtgatc 98
|||| ||||||||||||||||||||||||||||||||
Sbjct: 59 atcccatggtgttagattcacgcacaaactcgtgatc 95
>41156_tcc-MIR403b:mirbase
Length = 123
Score = 63.9 bits (32), Expect = 2e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 67 atggtgttagattcacgcacaaactcgtgatc 98
||||||||||||||||||||||||||||||||
Sbjct: 77 atggtgttagattcacgcacaaactcgtgatc 108
>41461_ptc-MIR403b:mirbase
Length = 100
Score = 58.0 bits (29), Expect = 1e-09
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 62 atccaatggtgttagattcacgcacaaactcgtgatc 98
||||||||| |||||||||||||||||||||| ||||
Sbjct: 60 atccaatggcgttagattcacgcacaaactcgcgatc 96
>41251_csi-MIR403:mirbase
Length = 130
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 70 gtgttagattcacgcacaaactcgtgat 97
||||||||||||||||||||||||||||
Sbjct: 97 gtgttagattcacgcacaaactcgtgat 124
>41679_vvi-MIR403c:mirbase
Length = 115
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 72 gttagattcacgcacaaactcgtgatc 98
|||||||||||||||||||||||||||
Sbjct: 84 gttagattcacgcacaaactcgtgatc 110
>41680_vvi-MIR403d:mirbase
Length = 86
Score = 52.0 bits (26), Expect = 8e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 69 ggtgttagattcacgcacaaactcgtgatc 98
||||||||||||||||||||||||| ||||
Sbjct: 52 ggtgttagattcacgcacaaactcgggatc 81
>41678_vvi-MIR403b:mirbase
Length = 86
Score = 52.0 bits (26), Expect = 8e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 69 ggtgttagattcacgcacaaactcgtgatc 98
||||||||||||||||||||||||| ||||
Sbjct: 52 ggtgttagattcacgcacaaactcgggatc 81
>41677_vvi-MIR403a:mirbase
Length = 115
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 72 gttagattcacgcacaaactcgtga 96
|||||||||||||||||||||||||
Sbjct: 84 gttagattcacgcacaaactcgtga 108
>41682_vvi-MIR403f:mirbase
Length = 108
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 67 atggtgttagattcacgcacaaactcgt 94
||||| ||||||||||||||||||||||
Sbjct: 72 atggtcttagattcacgcacaaactcgt 99
>41155_tcc-MIR403a:mirbase
Length = 126
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 71 tgttagattcacgcacaaactcgt 94
||||||||||||||||||||||||
Sbjct: 84 tgttagattcacgcacaaactcgt 107
>41681_vvi-MIR403e:mirbase
Length = 115
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 72 gttagattcacgcacaaactcgtgatc 98
|||||||||||||||||||||| ||||
Sbjct: 84 gttagattcacgcacaaactcgcgatc 110
>41462_ptc-MIR403c:mirbase
Length = 79
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 64 ccaatggtgttagattcacgcacaaactcg 93
||||||| |||||||||||||||||||||
Sbjct: 50 ccaatggctttagattcacgcacaaactcg 79
>41460_ptc-MIR403a:mirbase
Length = 132
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 73 ttagattcacgcacaaactcgt 94
||||||||||||||||||||||
Sbjct: 103 ttagattcacgcacaaactcgt 124
>40101_ath-MIR403:mirbase
Length = 135
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 73 ttagattcacgcacaaactcgt 94
||||||||||||||||||||||
Sbjct: 103 ttagattcacgcacaaactcgt 124
>39896_aly-MIR403:mirbase
Length = 125
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 73 ttagattcacgcacaaactcgt 94
||||||||||||||||||||||
Sbjct: 91 ttagattcacgcacaaactcgt 112
