miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>40399_ahy-MIR160:mirbase
Length = 126
Score = 250 bits (126), Expect = 2e-67
Identities = 126/126 (100%)
Strand = Plus / Plus
Query: 1 aaatattcgaattatgtgtctgcctggctccctgaatgccatgtaagttagtttgttaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaatattcgaattatgtgtctgcctggctccctgaatgccatgtaagttagtttgttaag 60
Query: 61 aaaagattaacaaacgtcttatatggcatgaagggagtcacgcaggcgattcattttgaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aaaagattaacaaacgtcttatatggcatgaagggagtcacgcaggcgattcattttgaa 120
Query: 121 acatat 126
||||||
Sbjct: 121 acatat 126
>41574_vvi-MIR160b:mirbase
Length = 104
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 19 tctgcctggctccctgaatgccatgtaag 47
|||||||||||||||||||||||| ||||
Sbjct: 9 tctgcctggctccctgaatgccatctaag 37
>41573_vvi-MIR160a:mirbase
Length = 103
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 19 tctgcctggctccctgaatgccatgtaag 47
|||||||||||||||||||||||| ||||
Sbjct: 9 tctgcctggctccctgaatgccatctaag 37
>41310_ptc-MIR160f:mirbase
Length = 100
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 18 gtctgcctggctccctgaatgccat 42
|||||||||||||||||||||||||
Sbjct: 8 gtctgcctggctccctgaatgccat 32
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 84 tggcatgaagggagtcacgcaggc 107
|||||||| |||||||||||||||
Sbjct: 72 tggcatgaggggagtcacgcaggc 95
>41087_tcc-MIR160a:mirbase
Length = 122
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 19 tctgcctggctccctgaatgccatgtaag 47
|||||||||||||||||||||||| ||||
Sbjct: 19 tctgcctggctccctgaatgccatctaag 47
>40341_rco-MIR160c:mirbase
Length = 94
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 19 tctgcctggctccctgaatgccatgtaag 47
|||||||||||||||||||||||| ||||
Sbjct: 4 tctgcctggctccctgaatgccatctaag 32
>41928_osa-MIR160f:mirbase
Length = 100
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 20 ctgcctggctccctgaatgccat 42
|||||||||||||||||||||||
Sbjct: 10 ctgcctggctccctgaatgccat 32
>41735_bdi-MIR160e:mirbase
Length = 144
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 20 ctgcctggctccctgaatgccat 42
|||||||||||||||||||||||
Sbjct: 30 ctgcctggctccctgaatgccat 52
>41309_ptc-MIR160e:mirbase
Length = 100
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 20 ctgcctggctccctgaatgccat 42
|||||||||||||||||||||||
Sbjct: 10 ctgcctggctccctgaatgccat 32
>42501_sbi-MIR160f:mirbase
Length = 110
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 tgcctggctccctgaatgccat 42
||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgaatgccat 22
>40660_mtr-MIR160c:mirbase
Length = 92
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 tgcctggctccctgaatgccat 42
||||||||||||||||||||||
Sbjct: 6 tgcctggctccctgaatgccat 27
>40312_bra-MIR160a:mirbase
Length = 127
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 14 atgtgtctgcctggctccctgaatgccat 42
|||||| |||||||||||||| |||||||
Sbjct: 19 atgtgtatgcctggctccctgtatgccat 47
>39731_smo-MIR160a:mirbase
Length = 106
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 19 tctgcctggctccctgaatgccat 42
|||||||||||||||| |||||||
Sbjct: 9 tctgcctggctccctgtatgccat 32
>39375_pab-MIR160b:mirbase
Length = 116
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 19 tctgcctggctccctgaatgccat 42
|||||||||||||||| |||||||
Sbjct: 18 tctgcctggctccctgtatgccat 41
