miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>40404_ahy-MIR408:mirbase
Length = 122
Score = 242 bits (122), Expect = 5e-65
Identities = 122/122 (100%)
Strand = Plus / Plus
Query: 1 gaagaagagatgacaaagaactgggaacaggcagagcatgaatggaactatcaatagaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gaagaagagatgacaaagaactgggaacaggcagagcatgaatggaactatcaatagaca 60
Query: 61 cattttgttcattgacgctcatgcactgcctcttccctggctctctctttctttttcctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cattttgttcattgacgctcatgcactgcctcttccctggctctctctttctttttcctt 120
Query: 121 ct 122
||
Sbjct: 121 ct 122
>41252_csi-MIR408:mirbase
Length = 153
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 80 catgcactgcctcttccctggctctct 106
|||||||||||||||||||||||||||
Sbjct: 119 catgcactgcctcttccctggctctct 145
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 23 gggaacaggcagagcatgaatggaac 48
|||||||||||||||||| |||||||
Sbjct: 63 gggaacaggcagagcatggatggaac 88
>40108_ath-MIR408:mirbase
Length = 218
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 80 catgcactgcctcttccctggctctctcttt 110
|||||||||||||||||||||||| ||||||
Sbjct: 119 catgcactgcctcttccctggctccctcttt 149
>39897_aly-MIR408:mirbase
Length = 211
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 80 catgcactgcctcttccctggctctctcttt 110
|||||||||||||||||||||||| ||||||
Sbjct: 116 catgcactgcctcttccctggctccctcttt 146
>41683_vvi-MIR408:mirbase
Length = 107
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 80 catgcactgcctcttccctggctct 104
|||||||||||||||||||||||||
Sbjct: 76 catgcactgcctcttccctggctct 100
>39490_ppt-MIR408b:mirbase
Length = 144
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 78 ctcatgcactgcctcttccctggct 102
|||||||||||||||||||||||||
Sbjct: 90 ctcatgcactgcctcttccctggct 114
>41463_ptc-MIR408:mirbase
Length = 105
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 80 catgcactgcctcttccctggct 102
|||||||||||||||||||||||
Sbjct: 75 catgcactgcctcttccctggct 97
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 23 gggaacaggcagagcatgaatgga 46
|||||||||||||||||| |||||
Sbjct: 18 gggaacaggcagagcatggatgga 41
>41193_aqc-MIR408:mirbase
Length = 87
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 80 catgcactgcctcttccctggct 102
|||||||||||||||||||||||
Sbjct: 23 catgcactgcctcttccctggct 1
>39428_pta-MIR408:mirbase
Length = 86
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 81 atgcactgcctcttccctggctc 103
|||||||||||||||||||||||
Sbjct: 64 atgcactgcctcttccctggctc 86
>42830_zma-MIR408b:mirbase
Length = 147
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 82 tgcactgcctcttccctggctc 103
||||||||||||||||||||||
Sbjct: 126 tgcactgcctcttccctggctc 147
>42829_zma-MIR408:mirbase
Length = 191
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 82 tgcactgcctcttccctggctc 103
||||||||||||||||||||||
Sbjct: 153 tgcactgcctcttccctggctc 174
>42647_tae-MIR408:mirbase
Length = 187
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 82 tgcactgcctcttccctggctc 103
||||||||||||||||||||||
Sbjct: 137 tgcactgcctcttccctggctc 158
>42474_ssp-MIR408d:mirbase
Length = 180
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 82 tgcactgcctcttccctggctc 103
||||||||||||||||||||||
Sbjct: 159 tgcactgcctcttccctggctc 180
>42473_ssp-MIR408a:mirbase
Length = 248
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 82 tgcactgcctcttccctggctc 103
||||||||||||||||||||||
Sbjct: 227 tgcactgcctcttccctggctc 248
>42465_sof-MIR408d:mirbase
Length = 215
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 82 tgcactgcctcttccctggctc 103
||||||||||||||||||||||
Sbjct: 177 tgcactgcctcttccctggctc 198
>42464_sof-MIR408c:mirbase
Length = 286
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 82 tgcactgcctcttccctggctc 103
||||||||||||||||||||||
Sbjct: 248 tgcactgcctcttccctggctc 269
>42463_sof-MIR408b:mirbase
Length = 286
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 82 tgcactgcctcttccctggctc 103
||||||||||||||||||||||
Sbjct: 248 tgcactgcctcttccctggctc 269
>42462_sof-MIR408a:mirbase
Length = 283
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 82 tgcactgcctcttccctggctc 103
||||||||||||||||||||||
Sbjct: 245 tgcactgcctcttccctggctc 266
>42052_osa-MIR408:mirbase
Length = 213
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 82 tgcactgcctcttccctggctc 103
||||||||||||||||||||||
Sbjct: 154 tgcactgcctcttccctggctc 175
>39742_smo-MIR408:mirbase
Length = 109
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 81 atgcactgcctcttccctggct 102
||||||||||||||||||||||
Sbjct: 76 atgcactgcctcttccctggct 97
>42600_sbi-MIR408:mirbase
Length = 205
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 82 tgcactgcctcttccctggct 102
|||||||||||||||||||||
Sbjct: 185 tgcactgcctcttccctggct 205
>40391_rco-MIR408:mirbase
Length = 92
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 82 tgcactgcctcttccctggct 102
|||||||||||||||||||||
Sbjct: 68 tgcactgcctcttccctggct 88
