miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>40462_gma-MIR172e:mirbase
Length = 153
Score = 250 bits (126), Expect = 3e-67
Identities = 146/150 (97%), Gaps = 2/150 (1%)
Strand = Plus / Plus
Query: 5 cagtcactgtttgccggtggagcatcatcaagattcacaagctttagggg-cattaattt 63
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 5 cagtcactgtttgccggtggagcatcatcaagattcacaagctttagggggcattaattt 64
Query: 64 gtttgaggtggttccttattgctccaaaaccaattagcccttttgctatgggaatcttga 123
|||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct: 65 gtttgaggtggtcccttattgatccaaa-ccaattagcccttttgctatgggaatcttga 123
Query: 124 tgatgctgcagcagcaataaatgactaata 153
||||||||||||||||||||||||||||||
Sbjct: 124 tgatgctgcagcagcaataaatgactaata 153
>40461_gma-MIR172d:mirbase
Length = 150
Score = 129 bits (65), Expect = 7e-31
Identities = 127/147 (86%), Gaps = 3/147 (2%)
Strand = Plus / Plus
Query: 5 cagtcactgtttgccggtggagcatcatcaagattcacaagctttaggggcattaatttg 64
||||| ||| |||| | ||||||||||||||||||||||||||| ||||| | ||||
Sbjct: 5 cagtcgctgattgcagatggagcatcatcaagattcacaagcttcagggg---ttttttg 61
Query: 65 tttgaggtggttccttattgctccaaaaccaattagcccttttgctatgggaatcttgat 124
|||| |||||| |||||||||||| ||| ||||| || |||| |||||||||||||||
Sbjct: 62 tttggggtggtcccttattgctcccaaatgaattaagccctttgatatgggaatcttgat 121
Query: 125 gatgctgcagcagcaataaatgactaa 151
|||||||||||||||||||| ||||||
Sbjct: 122 gatgctgcagcagcaataaacgactaa 148
>41124_tcc-MIR172a:mirbase
Length = 154
Score = 67.9 bits (34), Expect = 2e-12
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 110 tatgggaatcttgatgatgctgcagcagcaataaatgactaa 151
|||||||||||||||||||||||||| |||||||||| ||||
Sbjct: 111 tatgggaatcttgatgatgctgcagcggcaataaatggctaa 152
Score = 63.9 bits (32), Expect = 3e-11
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 5 cagtcactgtttgccggtggagcatcatcaagattcacaa 44
|||||||||||||| | |||||||||||||||||||||||
Sbjct: 2 cagtcactgtttgctgatggagcatcatcaagattcacaa 41
>41401_ptc-MIR172g:mirbase
Length = 143
Score = 63.9 bits (32), Expect = 3e-11
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 11 ctgtttgccggtggagcatcatcaagattcacaagcttta 50
||||||||| |||||||||||||||||||||||||||||
Sbjct: 1 ctgtttgcctatggagcatcatcaagattcacaagcttta 40
Score = 56.0 bits (28), Expect = 8e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 112 tgggaatcttgatgatgctgcagcagcaataa 143
|||||||||||||||||||||||| |||||||
Sbjct: 112 tgggaatcttgatgatgctgcagcggcaataa 143
>41050_ghr-MIR172:mirbase
Length = 125
Score = 61.9 bits (31), Expect = 1e-10
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 6 agtcactgtttgccggtggagcatcatcaagattcacaa 44
||||||||||||| | |||||||||||||||||||||||
Sbjct: 1 agtcactgtttgctgttggagcatcatcaagattcacaa 39
>41633_vvi-MIR172c:mirbase
Length = 138
Score = 58.0 bits (29), Expect = 2e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 112 tgggaatcttgatgatgctgcagcagcaataaa 144
|||||||||||||||||||||||| ||||||||
Sbjct: 106 tgggaatcttgatgatgctgcagcggcaataaa 138
Score = 50.1 bits (25), Expect = 5e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 13 gtttgccggtggagcatcatcaagattcacaag 45
|||||| | ||||||||||||||||||||||||
Sbjct: 1 gtttgcggatggagcatcatcaagattcacaag 33
>41402_ptc-MIR172h:mirbase
Length = 143
Score = 56.0 bits (28), Expect = 8e-09
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 11 ctgtttgccggtggagcatcatcaagattcacaagcttta 50
|||||||||| ||||||| ||||||||||||||| |||||
Sbjct: 1 ctgtttgccgatggagcaccatcaagattcacaaacttta 40
Score = 56.0 bits (28), Expect = 8e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 112 tgggaatcttgatgatgctgcagcagcaataa 143
|||||||||||||||||||||||| |||||||
Sbjct: 112 tgggaatcttgatgatgctgcagcggcaataa 143
>41396_ptc-MIR172b:mirbase
Length = 140
Score = 56.0 bits (28), Expect = 8e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 12 tgtttgccggtggagcatcatcaagattcaca 43
||||||| ||||||||||||||||||||||||
Sbjct: 2 tgtttgcgggtggagcatcatcaagattcaca 33
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 115 gaatcttgatgatgctgcagcagcaataa 143
||||||||||||||||||| | |||||||
Sbjct: 112 gaatcttgatgatgctgcatcggcaataa 140
>40366_rco-MIR172:mirbase
Length = 144
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 105 tttgctatgggaatcttgatgatgctgcagc 135
|||| ||||||||||||||||||||||||||
Sbjct: 110 tttgatatgggaatcttgatgatgctgcagc 140
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 22 tggagcatcatcaagattcacaagcttta 50
||||||||||||||||||||||| |||||
Sbjct: 5 tggagcatcatcaagattcacaaacttta 33
>41235_csi-MIR172c:mirbase
Length = 163
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 114 ggaatcttgatgatgctgcagcagcaataa 143
||||||||||||||||||||||||| ||||
Sbjct: 120 ggaatcttgatgatgctgcagcagcgataa 149
Score = 46.1 bits (23), Expect = 8e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 10 actgtttgccggtggagcatcatcaagattcacaa 44
||||||||| | ||||||| |||||||||||||||
Sbjct: 1 actgtttgcagttggagcaccatcaagattcacaa 35
>41126_tcc-MIR172c:mirbase
Length = 163
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 111 atgggaatcttgatgatgctgcagcagcaa 140
||||||||||||||||||||||| ||||||
Sbjct: 120 atgggaatcttgatgatgctgcatcagcaa 149
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 26 gcatcatcaagattcacaagctttag 51
||||||||||||||||||| ||||||
Sbjct: 26 gcatcatcaagattcacaaactttag 51
>41398_ptc-MIR172d:mirbase
Length = 182
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 26 gcatcatcaagattcacaagcttta 50
|||||||||||||||||||||||||
Sbjct: 16 gcatcatcaagattcacaagcttta 40
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 110 tatgggaatcttgatgatgctgca 133
||||||||||||||||||||||||
Sbjct: 149 tatgggaatcttgatgatgctgca 172
>40702_mtr-MIR172:mirbase
Length = 113
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 17 gccggtggagcatcatcaagattcacaag 45
|||||||||||||||||| ||||||||||
Sbjct: 1 gccggtggagcatcatcaggattcacaag 29
>40067_ath-MIR172e:mirbase
Length = 125
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 112 tgggaatcttgatgatgctgcagcagcaa 140
|||||||||||||||||||||| ||||||
Sbjct: 93 tgggaatcttgatgatgctgcatcagcaa 121
>39856_aly-MIR172e:mirbase
Length = 133
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 112 tgggaatcttgatgatgctgcagcagcaa 140
|||||||||||||||||||||| ||||||
Sbjct: 96 tgggaatcttgatgatgctgcatcagcaa 124
>41632_vvi-MIR172b:mirbase
Length = 118
Score = 48.1 bits (24), Expect = 2e-06
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 12 tgtttgccggtggagcatcatcaagattcaca 43
||||||| |||| |||||||||||||||||||
Sbjct: 117 tgtttgcaggtgtagcatcatcaagattcaca 86
Score = 40.1 bits (20), Expect = 5e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 115 gaatcttgatgatgctgcagcagcaata 142
||||||||||||||||||| | ||||||
Sbjct: 28 gaatcttgatgatgctgcatcggcaata 1
>41397_ptc-MIR172c:mirbase
Length = 128
Score = 48.1 bits (24), Expect = 2e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 12 tgtttgccggtggagcatcatcaagattcaca 43
||||||| |||| |||||||||||||||||||
Sbjct: 2 tgtttgcaggtgcagcatcatcaagattcaca 33
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 115 gaatcttgatgatgctgcagcagcaataa 143
||||||||||||||||||| |||| ||||
Sbjct: 100 gaatcttgatgatgctgcatcagccataa 128
>41395_ptc-MIR172a:mirbase
Length = 129
Score = 48.1 bits (24), Expect = 2e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 12 tgtttgccggtggagcatcatcaagattcaca 43
||||||| |||| |||||||||||||||||||
Sbjct: 2 tgtttgcaggtgcagcatcatcaagattcaca 33
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 115 gaatcttgatgatgctgcagcagcaataa 143
||||||||||||||||||| |||| ||||
Sbjct: 101 gaatcttgatgatgctgcatcagccataa 129
>41128_tcc-MIR172e:mirbase
Length = 189
Score = 48.1 bits (24), Expect = 2e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 12 tgtttgccggtggagcatcatcaagattcaca 43
||||||| |||| |||||||||||||||||||
Sbjct: 12 tgtttgcgggtgtagcatcatcaagattcaca 43
Score = 48.1 bits (24), Expect = 2e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 115 gaatcttgatgatgctgcagcagcaataaatgacta 150
||||||||||||||||||| | |||||||| |||||
Sbjct: 150 gaatcttgatgatgctgcatcggcaataaacgacta 185
>40065_ath-MIR172c:mirbase
Length = 133
Score = 48.1 bits (24), Expect = 2e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 110 tatgggaatcttgatgatgctgcagcagcaat 141
|||| ||||||||||||||||||||| |||||
Sbjct: 94 tatgagaatcttgatgatgctgcagctgcaat 125
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 22 tggagcatcatcaagattcacaa 44
|||||||||||||||||||||||
Sbjct: 17 tggagcatcatcaagattcacaa 39
>39854_aly-MIR172c:mirbase
Length = 133
Score = 48.1 bits (24), Expect = 2e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 110 tatgggaatcttgatgatgctgcagcagcaat 141
|||| ||||||||||||||||||||| |||||
Sbjct: 94 tatgagaatcttgatgatgctgcagctgcaat 125
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 22 tggagcatcatcaagattcacaa 44
|||||||||||||||||||||||
Sbjct: 17 tggagcatcatcaagattcacaa 39
>42561_sbi-MIR172e:mirbase
Length = 115
Score = 46.1 bits (23), Expect = 8e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 115 gaatcttgatgatgctgcagcagcaat 141
||||||||||||||||||| |||||||
Sbjct: 77 gaatcttgatgatgctgcaccagcaat 103
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 15 ttgccggtggagcatcatcaagattcaca 43
|||| |||| |||||||||||||||||||
Sbjct: 102 ttgctggtgcagcatcatcaagattcaca 74
>41399_ptc-MIR172e:mirbase
Length = 133
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 111 atgggaatcttgatgatgctgca 133
|||||||||||||||||||||||
Sbjct: 101 atgggaatcttgatgatgctgca 123
>41184_aqc-MIR172b:mirbase
Length = 108
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 111 atgggaatcttgatgatgctgca 133
|||||||||||||||||||||||
Sbjct: 83 atgggaatcttgatgatgctgca 105
>41125_tcc-MIR172b:mirbase
Length = 160
Score = 46.1 bits (23), Expect = 8e-06
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 115 gaatcttgatgatgctgcagcagcaataaatgact 149
|||||||||| ||||||||||||||| ||| ||||
Sbjct: 38 gaatcttgataatgctgcagcagcaaaaaacgact 4
Score = 46.1 bits (23), Expect = 8e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 115 gaatcttgatgatgctgcagcagcaataaatgact 149
||||||||||||||||||| | || ||||||||||
Sbjct: 121 gaatcttgatgatgctgcatcggccataaatgact 155
>40458_gma-MIR172a:mirbase
Length = 159
Score = 46.1 bits (23), Expect = 8e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 115 gaatcttgatgatgctgcagcagcaataaatgact 149
||||||||||||||||||| |||| ||||| ||||
Sbjct: 121 gaatcttgatgatgctgcatcagccataaacgact 155
>40066_ath-MIR172d:mirbase
Length = 124
Score = 46.1 bits (23), Expect = 8e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 115 gaatcttgatgatgctgcagcagcaat 141
||||||||||||||||||||| |||||
Sbjct: 89 gaatcttgatgatgctgcagcggcaat 115
>39855_aly-MIR172d:mirbase
Length = 163
Score = 46.1 bits (23), Expect = 8e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 115 gaatcttgatgatgctgcagcagcaat 141
||||||||||||||||||||| |||||
Sbjct: 113 gaatcttgatgatgctgcagcggcaat 139
>42779_zma-MIR172e:mirbase
Length = 174
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 112 tgggaatcttgatgatgctgca 133
||||||||||||||||||||||
Sbjct: 133 tgggaatcttgatgatgctgca 154
>42558_sbi-MIR172b:mirbase
Length = 170
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 112 tgggaatcttgatgatgctgca 133
||||||||||||||||||||||
Sbjct: 148 tgggaatcttgatgatgctgca 169
>41993_osa-MIR172d:mirbase
Length = 130
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 115 gaatcttgatgatgctgcagcagcaa 140
||||||||||||||||||| ||||||
Sbjct: 92 gaatcttgatgatgctgcatcagcaa 117
>41992_osa-MIR172c:mirbase
Length = 111
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 115 gaatcttgatgatgctgcagcagcaa 140
||||||||||||||||||| ||||||
Sbjct: 82 gaatcttgatgatgctgcaccagcaa 107
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 14 tttgccggtggagcatcatcaagattcac 42
||||| |||| ||||||||||||||||||
Sbjct: 108 tttgctggtgcagcatcatcaagattcac 80
>41991_osa-MIR172b:mirbase
Length = 238
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 112 tgggaatcttgatgatgctgca 133
||||||||||||||||||||||
Sbjct: 206 tgggaatcttgatgatgctgca 227
>41768_bdi-MIR172b:mirbase
Length = 254
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 112 tgggaatcttgatgatgctgca 133
||||||||||||||||||||||
Sbjct: 202 tgggaatcttgatgatgctgca 223
>41183_aqc-MIR172a:mirbase
Length = 135
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 110 tatgggaatcttgatgatgctgcagcagca 139
|||| ||||||||||||||||||| |||||
Sbjct: 94 tatgagaatcttgatgatgctgcatcagca 123
>40459_gma-MIR172b:mirbase
Length = 153
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 115 gaatcttgatgatgctgcagcagcaataaa 144
||||||||||||||||||| |||| |||||
Sbjct: 115 gaatcttgatgatgctgcatcagccataaa 144
Score = 40.1 bits (20), Expect = 5e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 12 tgtttgccggtggagcatcatcaagattcaca 43
||||||| | || |||||||||||||||||||
Sbjct: 12 tgtttgcggatgtagcatcatcaagattcaca 43
>41400_ptc-MIR172f:mirbase
Length = 161
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 115 gaatcttgatgatgctgcagcagcaataa 143
||||||||||||||||||| | |||||||
Sbjct: 133 gaatcttgatgatgctgcatcggcaataa 161
>41634_vvi-MIR172d:mirbase
Length = 109
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 115 gaatcttgatgatgctgcagcagc 138
||||||||||||||||||| ||||
Sbjct: 28 gaatcttgatgatgctgcatcagc 5
>41631_vvi-MIR172a:mirbase
Length = 110
Score = 40.1 bits (20), Expect = 5e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 115 gaatcttgatgatgctgcagcagcaata 142
||||||||||||||||||| | ||||||
Sbjct: 28 gaatcttgatgatgctgcatcggcaata 1
>41233_csi-MIR172a:mirbase
Length = 162
Score = 40.1 bits (20), Expect = 5e-04
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 115 gaatcttgatgatgctgcagcagcaataaatgacta 150
||||||||||||||||||| | || || ||||||||
Sbjct: 116 gaatcttgatgatgctgcaacggcgattaatgacta 151
>40463_gma-MIR172f:mirbase
Length = 133
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 115 gaatcttgatgatgctgcagcagc 138
||||||||||||||||||| ||||
Sbjct: 110 gaatcttgatgatgctgcatcagc 133
>40324_bra-MIR172b:mirbase
Length = 107
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 110 tatgggaatcttgatgatgctgca 133
|||| |||||||||||||||||||
Sbjct: 78 tatgagaatcttgatgatgctgca 101
>40323_bra-MIR172a:mirbase
Length = 119
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 110 tatgggaatcttgatgatgctgca 133
|||| |||||||||||||||||||
Sbjct: 83 tatgagaatcttgatgatgctgca 106
>40307_bol-MIR172b:mirbase
Length = 107
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 110 tatgggaatcttgatgatgctgca 133
|||| |||||||||||||||||||
Sbjct: 78 tatgagaatcttgatgatgctgca 101
>40306_bol-MIR172a:mirbase
Length = 119
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 110 tatgggaatcttgatgatgctgca 133
|||| |||||||||||||||||||
Sbjct: 83 tatgagaatcttgatgatgctgca 106
>40064_ath-MIR172b:mirbase
Length = 95
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 110 tatgggaatcttgatgatgctgca 133
|||| |||||||||||||||||||
Sbjct: 67 tatgagaatcttgatgatgctgca 90
>39853_aly-MIR172b:mirbase
Length = 146
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 110 tatgggaatcttgatgatgctgca 133
|||| |||||||||||||||||||
Sbjct: 89 tatgagaatcttgatgatgctgca 112
