miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>40468_gma-MIR390a:mirbase
Length = 105
Score = 208 bits (105), Expect = 6e-55
Identities = 105/105 (100%)
Strand = Plus / Plus
Query: 1 agaatctgtaaagctcaggagggatagcgccatggatgatcttctcttcactcttgatct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agaatctgtaaagctcaggagggatagcgccatggatgatcttctcttcactcttgatct 60
Query: 61 tctcttgcgctatccatcctgagtttcatggcttctatcttcaca 105
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tctcttgcgctatccatcctgagtttcatggcttctatcttcaca 105
>40705_mtr-MIR390:mirbase
Length = 100
Score = 75.8 bits (38), Expect = 6e-15
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 54 ttgatcttctcttgcgctatccatcctgagtttcatgg 91
||||||||||||||||||||||||||||||||||||||
Sbjct: 63 ttgatcttctcttgcgctatccatcctgagtttcatgg 100
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 6 ctgtaaagctcaggagggatagcgccat 33
|||| |||||||||||||||||||||||
Sbjct: 1 ctgttaagctcaggagggatagcgccat 28
>41053_ghr-MIR390c:mirbase
Length = 114
Score = 73.8 bits (37), Expect = 2e-14
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 1 agaatctgtaaagctcaggagggatagcgccatggatgatc 41
||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1 agaatctgttaagctcaggagggatagcgccatggatgatc 41
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 67 gcgctatccatcctgagtttcat 89
|||||||||||||||||||||||
Sbjct: 87 gcgctatccatcctgagtttcat 109
>41052_ghr-MIR390b:mirbase
Length = 132
Score = 73.8 bits (37), Expect = 2e-14
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 1 agaatctgtaaagctcaggagggatagcgccatggatgatc 41
||||||||| |||||||||||||||||||||||||||||||
Sbjct: 8 agaatctgttaagctcaggagggatagcgccatggatgatc 48
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 67 gcgctatccatcctgagtttcat 89
|||||||||||||||||||||||
Sbjct: 94 gcgctatccatcctgagtttcat 116
>41051_ghr-MIR390a:mirbase
Length = 124
Score = 73.8 bits (37), Expect = 2e-14
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 1 agaatctgtaaagctcaggagggatagcgccatggatgatc 41
||||||||| |||||||||||||||||||||||||||||||
Sbjct: 5 agaatctgttaagctcaggagggatagcgccatggatgatc 45
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 67 gcgctatccatcctgagtttcat 89
|||||||||||||||||||||||
Sbjct: 91 gcgctatccatcctgagtttcat 113
>39862_aly-MIR390a:mirbase
Length = 129
Score = 69.9 bits (35), Expect = 3e-13
Identities = 42/43 (97%), Gaps = 1/43 (2%)
Strand = Plus / Plus
Query: 1 agaatctgtaaagctcaggagggatagcgccatggatgatctt 43
||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 19 agaatctgtaaagctcaggagggatagcgccat-gatgatctt 60
>40072_ath-MIR390a:mirbase
Length = 107
Score = 67.9 bits (34), Expect = 1e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 1 agaatctgtaaagctcaggagggatagcgccatg 34
||||||||||||||||||||||||||||||||||
Sbjct: 8 agaatctgtaaagctcaggagggatagcgccatg 41
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 67 gcgctatccatcctgagtttcat 89
|||||||||||||||||||||||
Sbjct: 69 gcgctatccatcctgagtttcat 91
>41131_tcc-MIR390b:mirbase
Length = 120
Score = 65.9 bits (33), Expect = 5e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 1 agaatctgtaaagctcaggagggatagcgccat 33
|||||||||||||||||||||||||||||||||
Sbjct: 11 agaatctgtaaagctcaggagggatagcgccat 43
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 67 gcgctatccatcctgagtttcatggcttct 96
|||||||| |||||||||||||||| ||||
Sbjct: 79 gcgctatctatcctgagtttcatgggttct 108
>40293_bna-MIR390b:mirbase
Length = 105
Score = 65.9 bits (33), Expect = 5e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 1 agaatctgtaaagctcaggagggatagcgccat 33
|||||||||||||||||||||||||||||||||
Sbjct: 8 agaatctgtaaagctcaggagggatagcgccat 40
>41237_csi-MIR390:mirbase
Length = 154
Score = 61.9 bits (31), Expect = 9e-11
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 1 agaatctgtaaagctcaggagggatagcgccatgg 35
||||||||| |||||||||||||||||||||||||
Sbjct: 11 agaatctgttaagctcaggagggatagcgccatgg 45
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 67 gcgctatccatcctgagtttcatggcttct 96
||||||||||||||||||||||||||||||
Sbjct: 98 gcgctatccatcctgagtttcatggcttct 127
>41640_vvi-MIR390:mirbase
Length = 140
Score = 60.0 bits (30), Expect = 3e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 1 agaatctgtaaagctcaggagggatagcgccatg 34
||||||||| ||||||||||||||||||||||||
Sbjct: 1 agaatctgttaagctcaggagggatagcgccatg 34
>41413_ptc-MIR390a:mirbase
Length = 119
Score = 60.0 bits (30), Expect = 3e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 1 agaatctgtaaagctcaggagggatagcgccatg 34
||||||||| ||||||||||||||||||||||||
Sbjct: 1 agaatctgttaagctcaggagggatagcgccatg 34
>41130_tcc-MIR390a:mirbase
Length = 129
Score = 60.0 bits (30), Expect = 3e-10
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 6 ctgtaaagctcaggagggatagcgccatggatgatctt 43
|||| ||||||||||||||||||||||| |||||||||
Sbjct: 16 ctgttaagctcaggagggatagcgccattgatgatctt 53
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 67 gcgctatccatcctgagtttcat 89
|||||||||||||||||||||||
Sbjct: 88 gcgctatccatcctgagtttcat 110
>40294_bna-MIR390c:mirbase
Length = 128
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 6 ctgtaaagctcaggagggatagcgccatg 34
|||||||||||||||||||||||||||||
Sbjct: 18 ctgtaaagctcaggagggatagcgccatg 46
Score = 52.0 bits (26), Expect = 8e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 67 gcgctatccatcctgagtttcatggcttct 96
||||||||||||||||||| ||||||||||
Sbjct: 85 gcgctatccatcctgagttccatggcttct 114
>40292_bna-MIR390a:mirbase
Length = 144
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 6 ctgtaaagctcaggagggatagcgccatg 34
|||||||||||||||||||||||||||||
Sbjct: 28 ctgtaaagctcaggagggatagcgccatg 56
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 67 gcgctatccatcctgagtttcatggcttct 96
||||||||||||||||||| |||||||||
Sbjct: 95 gcgctatccatcctgagttctatggcttct 124
>40469_gma-MIR390b:mirbase
Length = 103
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 1 agaatctgtaaagctcaggagggatagc 28
||||||||||||||||||||||||||||
Sbjct: 1 agaatctgtaaagctcaggagggatagc 28
>40372_rco-MIR390b:mirbase
Length = 122
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 11 aagctcaggagggatagcgccatggatg 38
||||||||||||||||||||||||||||
Sbjct: 6 aagctcaggagggatagcgccatggatg 33
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 58 tcttctcttgcgctatccatcctgagtttcat 89
|||||| | |||||||||||||||||||||||
Sbjct: 87 tcttctatagcgctatccatcctgagtttcat 118
>41416_ptc-MIR390d:mirbase
Length = 106
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 1 agaatctgtaaagctcaggagggatagcgcc 31
||||||||| |||||||||||||||||||||
Sbjct: 1 agaatctgttaagctcaggagggatagcgcc 31
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 67 gcgctatccatcctgagttt 86
||||||||||||||||||||
Sbjct: 79 gcgctatccatcctgagttt 98
>41415_ptc-MIR390c:mirbase
Length = 123
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 4 atctgtaaagctcaggagggatagcgccatg 34
|||||| ||||||||||||||||||||||||
Sbjct: 4 atctgttaagctcaggagggatagcgccatg 34
>41414_ptc-MIR390b:mirbase
Length = 106
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 1 agaatctgtaaagctcaggagggatagcgcc 31
||||||||| |||||||||||||||||||||
Sbjct: 1 agaatctgttaagctcaggagggatagcgcc 31
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 67 gcgctatccatcctgagtttcatggctt 94
||||||||||||||||||||||| ||||
Sbjct: 79 gcgctatccatcctgagtttcattgctt 106
>40073_ath-MIR390b:mirbase
Length = 120
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 9 taaagctcaggagggatagcgccatgg 35
|||||||||||||||||||||||||||
Sbjct: 13 taaagctcaggagggatagcgccatgg 39
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 67 gcgctatccatcctgagtttcatggcttct 96
||||||||||||||||||| ||| ||||||
Sbjct: 87 gcgctatccatcctgagttccatagcttct 116
>39863_aly-MIR390b:mirbase
Length = 127
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 9 taaagctcaggagggatagcgccatg 34
||||||||||||||||||||||||||
Sbjct: 17 taaagctcaggagggatagcgccatg 42
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 67 gcgctatccatcctgagtttcatggcttct 96
||||||||||||||||||| ||| ||||||
Sbjct: 91 gcgctatccatcctgagttccatagcttct 120
>39485_ppt-MIR390a:mirbase
Length = 137
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 aagctcaggagggatagcgccat 33
|||||||||||||||||||||||
Sbjct: 16 aagctcaggagggatagcgccat 38
>40371_rco-MIR390a:mirbase
Length = 108
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 6 ctgtaaagctcaggagggatagcgcc 31
|||| |||||||||||||||||||||
Sbjct: 1 ctgttaagctcaggagggatagcgcc 26
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 67 gcgctatccatcctgagtttca 88
||||||||||||||||||||||
Sbjct: 82 gcgctatccatcctgagtttca 103
>42785_zma-MIR390b:mirbase
Length = 192
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 aagctcaggagggatagcgcc 31
|||||||||||||||||||||
Sbjct: 2 aagctcaggagggatagcgcc 22
>42784_zma-MIR390a:mirbase
Length = 181
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 aagctcaggagggatagcgcc 31
|||||||||||||||||||||
Sbjct: 2 aagctcaggagggatagcgcc 22
>42565_sbi-MIR390:mirbase
Length = 179
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 aagctcaggagggatagcgcc 31
|||||||||||||||||||||
Sbjct: 3 aagctcaggagggatagcgcc 23
>41996_osa-MIR390:mirbase
Length = 91
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 aagctcaggagggatagcgcc 31
|||||||||||||||||||||
Sbjct: 19 aagctcaggagggatagcgcc 39
>41773_bdi-MIR390b:mirbase
Length = 186
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 aagctcaggagggatagcgcc 31
|||||||||||||||||||||
Sbjct: 19 aagctcaggagggatagcgcc 39
>41772_bdi-MIR390:mirbase
Length = 209
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 aagctcaggagggatagcgcc 31
|||||||||||||||||||||
Sbjct: 31 aagctcaggagggatagcgcc 51
>39486_ppt-MIR390b:mirbase
Length = 175
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 aagctcaggagggatagcgcc 31
|||||||||||||||||||||
Sbjct: 28 aagctcaggagggatagcgcc 48
>39487_ppt-MIR390c:mirbase
Length = 135
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 agctcaggagggatagcgcc 31
||||||||||||||||||||
Sbjct: 14 agctcaggagggatagcgcc 33
