miRNEST 2.0, an integrative microRNA resource :: BLAST
>40474_gma-MIR396b:mirbase
Length = 126
Score = 198 bits (100), Expect = 6e-52
Identities = 106/108 (98%)
Strand = Plus / Plus
Query: 1 ggtcatgcttttccacagctttcttgaacttcttatgcatcttatatctctccacttcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 11 ggtcatgcttttccacagctttcttgaacttcttatgcatcttatatctctccacctcca 70
Query: 61 gcattttaagccctagaagctcaagaaagctgtgggagaatatggcaa 108
| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71 ggattttaagccctagaagctcaagaaagctgtgggagaatatggcaa 118
>40726_mtr-MIR396a:mirbase
Length = 93
Score = 71.9 bits (36), Expect = 9e-14
Identities = 82/97 (84%), Gaps = 4/97 (4%)
Strand = Plus / Plus
Query: 6 tgcttttccacagctttcttgaacttcttatgcatcttatatctctccacttccagcatt 65
||||||||||||||||||||||||||||| | |||||| |||| | || || |||
Sbjct: 1 tgcttttccacagctttcttgaacttctttcgtatcttaaatctgt----tttcaagatt 56
Query: 66 ttaagccctagaagctcaagaaagctgtgggagaata 102
||| |||||||||||||||||||||||||||||||
Sbjct: 57 aaaagtcctagaagctcaagaaagctgtgggagaata 93
>41439_ptc-MIR396e:mirbase
Length = 145
Score = 67.9 bits (34), Expect = 1e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 1 ggtcatgcttttccacagctttcttgaacttctt 34
||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtcatgcttttccacagctttcttgaacttctt 34
Score = 52.0 bits (26), Expect = 8e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 76 gaagctcaagaaagctgtgggagaatatgg 105
||||||||||||||||||||||||| ||||
Sbjct: 116 gaagctcaagaaagctgtgggagaacatgg 145
>40475_gma-MIR396c:mirbase
Length = 117
Score = 67.9 bits (34), Expect = 1e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 5 atgcttttccacagctttcttgaacttcttatgc 38
||||||||||||||||||||||||||||||||||
Sbjct: 15 atgcttttccacagctttcttgaacttcttatgc 48
>41438_ptc-MIR396d:mirbase
Length = 154
Score = 63.9 bits (32), Expect = 2e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 1 ggtcatgcttttccacagctttcttgaacttc 32
||||||||||||||||||||||||||||||||
Sbjct: 1 ggtcatgcttttccacagctttcttgaacttc 32
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 76 gaagctcaagaaagctgtgggagaatatgg 105
||||||||||||||| ||||||||| ||||
Sbjct: 125 gaagctcaagaaagccgtgggagaacatgg 154
>41212_ccl-MIR396:mirbase
Length = 277
Score = 63.9 bits (32), Expect = 2e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 1 ggtcatgcttttccacagctttcttgaacttc 32
||||||||||||||||||||||||||||||||
Sbjct: 133 ggtcatgcttttccacagctttcttgaacttc 164
Score = 52.0 bits (26), Expect = 8e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 78 agctcaagaaagctgtgggagaatatggca 107
||||||||||||||||||||||| ||||||
Sbjct: 233 agctcaagaaagctgtgggagaacatggca 262
>41661_vvi-MIR396b:mirbase
Length = 108
Score = 61.9 bits (31), Expect = 9e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 4 catgcttttccacagctttcttgaacttctt 34
|||||||||||||||||||||||||||||||
Sbjct: 7 catgcttttccacagctttcttgaacttctt 37
Score = 42.1 bits (21), Expect = 8e-05
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 4 catgcttttccacagctttcttgaacttc 32
|||| ||| ||||||||||||||||||||
Sbjct: 104 catggtttcccacagctttcttgaacttc 76
>41660_vvi-MIR396a:mirbase
Length = 116
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 2 gtcatgcttttccacagctttcttgaact 30
|||||||||||||||||||||||||||||
Sbjct: 5 gtcatgcttttccacagctttcttgaact 33
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 74 tagaagctcaagaaagctgtgggagaatatggcaa 108
||||||||||||||||||||||||| | |||||||
Sbjct: 82 tagaagctcaagaaagctgtgggaggacatggcaa 116
>41243_csi-MIR396c:mirbase
Length = 178
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 2 gtcatgcttttccacagctttcttgaacttctt 34
|||||| ||||||||||||||||||||||||||
Sbjct: 4 gtcatgtttttccacagctttcttgaacttctt 36
>40379_rco-MIR396:mirbase
Length = 124
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 6 tgcttttccacagctttcttgaacttctt 34
|||||||||||||||||||||||||||||
Sbjct: 1 tgcttttccacagctttcttgaacttctt 29
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 81 tcaagaaagctgtgggagaa 100
||||||||||||||||||||
Sbjct: 101 tcaagaaagctgtgggagaa 120
>41142_tcc-MIR396e:mirbase
Length = 146
Score = 56.0 bits (28), Expect = 5e-09
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 2 gtcatgcttttccacagctttcttgaacttct 33
||||||||||||||| ||||||||||||||||
Sbjct: 133 gtcatgcttttccacggctttcttgaacttct 102
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaacttct 33
|||||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaacttct 43
>41140_tcc-MIR396c:mirbase
Length = 152
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 4 catgcttttccacagctttcttgaactt 31
||||||||||||||||||||||||||||
Sbjct: 14 catgcttttccacagctttcttgaactt 41
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 76 gaagctcaagaaagctgtgggagaatatggcaa 108
|||||||||||||||||||||| || |||||||
Sbjct: 109 gaagctcaagaaagctgtgggaaaacatggcaa 141
>40086_ath-MIR396b:mirbase
Length = 135
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 1 ggtcatgcttttccacagctttcttgaactt 31
|||||| ||||||||||||||||||||||||
Sbjct: 1 ggtcatacttttccacagctttcttgaactt 31
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 76 gaagctcaagaaagctgtggga 97
||||||||||||||||||||||
Sbjct: 104 gaagctcaagaaagctgtggga 125
>42584_sbi-MIR396c:mirbase
Length = 162
Score = 52.0 bits (26), Expect = 8e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 4 catgcttttccacagctttcttgaacttct 33
||||| ||||||||||||||||||||||||
Sbjct: 14 catgcctttccacagctttcttgaacttct 43
>42028_osa-MIR396c:mirbase
Length = 141
Score = 52.0 bits (26), Expect = 8e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 4 catgcttttccacagctttcttgaacttct 33
||||| ||||||||||||||||||||||||
Sbjct: 4 catgcctttccacagctttcttgaacttct 33
>39426_pta-MIR396:mirbase
Length = 119
Score = 52.0 bits (26), Expect = 8e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 2 gtcatgcttttccacagctttcttgaactt 31
||||| ||||||||||||||||||||||||
Sbjct: 8 gtcatacttttccacagctttcttgaactt 37
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 4 catgcttttccacagctttcttgaactt 31
|||||||| |||||| ||||||||||||
Sbjct: 110 catgctttcccacagttttcttgaactt 83
>42812_zma-MIR396f:mirbase
Length = 117
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 10 tttccacagctttcttgaacttctt 34
|||||||||||||||||||||||||
Sbjct: 1 tttccacagctttcttgaacttctt 25
>42811_zma-MIR396e:mirbase
Length = 166
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 10 tttccacagctttcttgaacttctt 34
|||||||||||||||||||||||||
Sbjct: 1 tttccacagctttcttgaacttctt 25
>41437_ptc-MIR396c:mirbase
Length = 102
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 4 catgcttttccacagctttcttgaacttc 32
|||| ||||||||||||||||||||||||
Sbjct: 4 catgtttttccacagctttcttgaacttc 32
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 3 tcatgcttttccacagctttcttgaacttctta 35
||||||| |||||| ||||||||||||||||||
Sbjct: 102 tcatgctattccacggctttcttgaacttctta 70
>41441_ptc-MIR396g:mirbase
Length = 168
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 4 catgcttttccacagctttcttgaactt 31
||||||||||||| ||||||||||||||
Sbjct: 4 catgcttttccacggctttcttgaactt 31
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 77 aagctcaagaaagctgtgggagaatatg 104
|||||||||||||| |||||| ||||||
Sbjct: 140 aagctcaagaaagccgtgggaaaatatg 167
>41141_tcc-MIR396d:mirbase
Length = 182
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 4 catgcttttccacagctttcttgaactt 31
||||||||||||| ||||||||||||||
Sbjct: 14 catgcttttccacggctttcttgaactt 41
>41795_bdi-MIR396e:mirbase
Length = 201
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 tttccacagctttcttgaacttc 32
|||||||||||||||||||||||
Sbjct: 31 tttccacagctttcttgaacttc 53
>39878_aly-MIR396b:mirbase
Length = 188
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 ttttccacagctttcttgaactt 31
|||||||||||||||||||||||
Sbjct: 30 ttttccacagctttcttgaactt 52
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 75 agaagctcaagaaagctgtggga 97
|||||||||||||||||||||||
Sbjct: 131 agaagctcaagaaagctgtggga 153
Score = 42.1 bits (21), Expect = 8e-05
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 2 gtcatgcttttccacagctttcttgaacttctt 34
|||||| ||| ||||||||||||||| ||||||
Sbjct: 162 gtcatgttttcccacagctttcttgagcttctt 130
>39741_smo-MIR396:mirbase
Length = 168
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 3 tcatgcttttccacagctttcttgaac 29
|||||||||||||| ||||||||||||
Sbjct: 3 tcatgcttttccacggctttcttgaac 29
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 13 ccacagctttcttgaacttc 32
||||||||||||||||||||
Sbjct: 153 ccacagctttcttgaacttc 134
>39379_pab-MIR396a:mirbase
Length = 100
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 4 catgcttttccacagctttcttgaact 30
|||||| ||||||||||||||||||||
Sbjct: 9 catgctcttccacagctttcttgaact 35
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 78 agctcaagaaagctgtggga 97
||||||||||||||||||||
Sbjct: 64 agctcaagaaagctgtggga 83
>41242_csi-MIR396b:mirbase
Length = 134
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 ttttccacagctttcttgaact 30
||||||||||||||||||||||
Sbjct: 18 ttttccacagctttcttgaact 39
>41189_aqc-MIR396b:mirbase
Length = 89
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaacttcttat 36
||||||||||||||||||||| ||||
Sbjct: 1 ttccacagctttcttgaactttttat 26
>41138_tcc-MIR396a:mirbase
Length = 146
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 ttttccacagctttcttgaact 30
||||||||||||||||||||||
Sbjct: 19 ttttccacagctttcttgaact 40
>40296_bna-MIR396a:mirbase
Length = 117
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaactt 31
|||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactt 21
>42814_zma-MIR396h:mirbase
Length = 124
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 98 ttccacagctttcttgaact 79
>42813_zma-MIR396g:mirbase
Length = 114
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 111 ttccacagctttcttgaact 92
>42808_zma-MIR396b:mirbase
Length = 136
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>42807_zma-MIR396a:mirbase
Length = 137
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>42583_sbi-MIR396b:mirbase
Length = 128
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>42582_sbi-MIR396a:mirbase
Length = 125
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>42472_ssp-MIR396:mirbase
Length = 95
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>42461_sof-MIR396:mirbase
Length = 134
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>42027_osa-MIR396b:mirbase
Length = 116
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>42026_osa-MIR396a:mirbase
Length = 154
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>41794_bdi-MIR396d:mirbase
Length = 152
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 33 ttccacagctttcttgaact 52
>41793_bdi-MIR396c:mirbase
Length = 153
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 33 ttccacagctttcttgaact 52
>41663_vvi-MIR396d:mirbase
Length = 120
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>41662_vvi-MIR396c:mirbase
Length = 108
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>41436_ptc-MIR396b:mirbase
Length = 132
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>41435_ptc-MIR396a:mirbase
Length = 123
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>41241_csi-MIR396a:mirbase
Length = 153
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 9 ttttccacagctttcttgaa 28
||||||||||||||||||||
Sbjct: 109 ttttccacagctttcttgaa 90
>41188_aqc-MIR396a:mirbase
Length = 122
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>41139_tcc-MIR396b:mirbase
Length = 151
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>41058_ghr-MIR396b:mirbase
Length = 135
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>41057_ghr-MIR396a:mirbase
Length = 136
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>40727_mtr-MIR396b:mirbase
Length = 95
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 6 ttccacagctttcttgaact 25
>40646_lja-MIR396:mirbase
Length = 108
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 16 ttccacagctttcttgaact 35
>40477_gma-MIR396e:mirbase
Length = 114
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 7 ttccacagctttcttgaact 26
>40473_gma-MIR396a:mirbase
Length = 140
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>40085_ath-MIR396a:mirbase
Length = 151
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>39877_aly-MIR396a:mirbase
Length = 172
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 24 ttccacagctttcttgaact 43
>39381_pab-MIR396c:mirbase
Length = 143
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 9 ttttccacagctttcttgaacttc 32
|||||||| |||||||||||||||
Sbjct: 23 ttttccacggctttcttgaacttc 46
