miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>40512_gma-MIR1520k:mirbase
Length = 128
Score = 167 bits (84), Expect = 3e-42
Identities = 117/128 (91%)
Strand = Plus / Plus
Query: 19 ttctgattggatgatgactgtcacatgtcatattctaattggtcaatgaaaacagcaatg 78
|||| |||||||||||| |||||| |||||| |||| ||| |||||||||||||||||||
Sbjct: 1 ttcttattggatgatgattgtcacgtgtcatgttctgattagtcaatgaaaacagcaatg 60
Query: 79 catttcatctttcatggagttgacatccaatcagaacatgacacgtgacagtcgtcatcc 138
|||||||||||||||| |||||||||||||||||||||||||| |||||||| ||| ||
Sbjct: 61 tatttcatctttcatggtgttgacatccaatcagaacatgacacatgacagtcatcaacc 120
Query: 139 aataagaa 146
||||||||
Sbjct: 121 aataagaa 128
Score = 63.9 bits (32), Expect = 3e-11
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 107 aatcagaacatgacacgtgacagtcgtcatccaataagaa 146
|||||||||||||||||||||| || ||||||||||||||
Sbjct: 40 aatcagaacatgacacgtgacaatcatcatccaataagaa 1
>40513_gma-MIR1520l:mirbase
Length = 110
Score = 145 bits (73), Expect = 1e-35
Identities = 100/109 (91%)
Strand = Plus / Plus
Query: 28 gatgatgactgtcacatgtcatattctaattggtcaatgaaaacagcaatgcatttcatc 87
|||||||| |||||| ||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct: 1 gatgatgattgtcacgtgtcatattctgattggtcaatgaaaacaacaatgcatttcatc 60
Query: 88 tttcatggagttgacatccaatcagaacatgacacgtgacagtcgtcat 136
|| ||||||||||||| ||||||||||||||||||||| |||| ||||
Sbjct: 61 ttatatggagttgacattcaatcagaacatgacacgtgatagtcatcat 109
Score = 42.1 bits (21), Expect = 1e-04
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 105 ccaatcagaacatgacacgtgacagtcgtcatc 137
|||||||||| ||||||||||||| || |||||
Sbjct: 33 ccaatcagaatatgacacgtgacaatcatcatc 1
>40514_gma-MIR1520m:mirbase
Length = 128
Score = 143 bits (72), Expect = 5e-35
Identities = 114/128 (89%)
Strand = Plus / Minus
Query: 19 ttctgattggatgatgactgtcacatgtcatattctaattggtcaatgaaaacagcaatg 78
|||| |||| ||||| | ||||||||||||| |||| |||| | |||||||||| ||||
Sbjct: 128 ttcttattgaatgataattgtcacatgtcatgttctgattgataaatgaaaacaacaatt 69
Query: 79 catttcatctttcatggagttgacatccaatcagaacatgacacgtgacagtcgtcatcc 138
|||||||||||| ||||||||||||||||||||||||||| ||||| |||||| ||||||
Sbjct: 68 catttcatcttttatggagttgacatccaatcagaacatggcacgtaacagtcatcatcc 9
Query: 139 aataagaa 146
||||||||
Sbjct: 8 aataagaa 1
Score = 42.1 bits (21), Expect = 1e-04
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 106 caatcagaacatgacacgtgacagtcgtcatccaataagaa 146
|||||||||||||||| |||||| | |||| |||||||||
Sbjct: 88 caatcagaacatgacatgtgacaattatcattcaataagaa 128
>40511_gma-MIR1520j:mirbase
Length = 176
Score = 135 bits (68), Expect = 1e-32
Identities = 137/160 (85%)
Strand = Plus / Minus
Query: 5 tgtcacgtatcacgttctgattggatgatgactgtcacatgtcatattctaattggtcaa 64
||||| || ||||||||| ||||||||||||| |||| ||| || || | |||||| |
Sbjct: 166 tgtcatgtgtcacgttcttattggatgatgacgatcacgtgttatgttatgattggttag 107
Query: 65 tgaaaacagcaatgcatttcatctttcatggagttgacatccaatcagaacatgacacgt 124
|||||| | ||||||||||||||||||||||||||| ||||||||| |||||| ||||
Sbjct: 106 tgaaaataataatgcatttcatctttcatggagttgatatccaatcataacatggtacgt 47
Query: 125 gacagtcgtcatccaataagaacgtgacatatgacagtca 164
|||| || |||| ||||||||||||||||| |||||||||
Sbjct: 46 gacaatcatcattcaataagaacgtgacatgtgacagtca 7
Score = 63.9 bits (32), Expect = 3e-11
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 105 ccaatcagaacatgacacgtgacagtcgtcatccaataagaacgtgacatatgaca 160
||||||| ||||| |||||||| ||| ||||||||||||||||||||| ||||||
Sbjct: 111 ccaatcataacataacacgtgatcgtcatcatccaataagaacgtgacacatgaca 166
>40502_gma-MIR1520a:mirbase
Length = 150
Score = 131 bits (66), Expect = 2e-31
Identities = 111/125 (88%), Gaps = 2/125 (1%)
Strand = Plus / Plus
Query: 18 gttctgattggatgatgactgtcacatgtcatattctaattggtcaatgaaaacagcaat 77
||||| |||||||||||||||| |||||| |||| ||||||||||||||| | ||||
Sbjct: 28 gttcttattggatgatgactgttg--tgtcatgttctgattggtcaatgaaaataacaat 85
Query: 78 gcatttcatctttcatggagttgacatccaatcagaacatgacacgtgacagtcgtcatc 137
||||||||||||| |||||||||||||||||| ||||||||| || |||||||| |||||
Sbjct: 86 gcatttcatcttttatggagttgacatccaattagaacatgatacatgacagtcatcatc 145
Query: 138 caata 142
|||||
Sbjct: 146 caata 150
Score = 58.0 bits (29), Expect = 2e-09
Identities = 53/60 (88%), Gaps = 2/60 (3%)
Strand = Plus / Minus
Query: 105 ccaatcagaacatgacacgtgacagtcgtcatccaataagaacgtgacatatgacagtca 164
|||||||||||||||||| |||||| ||||||||||||||| ||||| ||||| ||||
Sbjct: 68 ccaatcagaacatgacaca--acagtcatcatccaataagaacatgacacatgacggtca 11
Score = 42.1 bits (21), Expect = 1e-04
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 24 attggatgatgactgtcacatgtcatattctaattgg 60
|||||||||||||||||| | |||| ||||||||||
Sbjct: 149 attggatgatgactgtcatgtatcatgttctaattgg 113
>40510_gma-MIR1520i:mirbase
Length = 144
Score = 129 bits (65), Expect = 7e-31
Identities = 107/121 (88%)
Strand = Plus / Plus
Query: 7 tcacgtatcacgttctgattggatgatgactgtcacatgtcatattctaattggtcaatg 66
|||||| ||||||||| ||||||| ||||||||||| |||||| |||| |||||||||||
Sbjct: 13 tcacgtgtcacgttcttattggattatgactgtcacgtgtcatgttctgattggtcaatg 72
Query: 67 aaaacagcaatgcatttcatctttcatggagttgacatccaatcagaacatgacacgtga 126
|||| | |||| ||||| |||||| ||||||||||||| |||||| ||| ||||||||||
Sbjct: 73 aaaataacaatacatttaatcttttatggagttgacattcaatcaaaacgtgacacgtga 132
Query: 127 c 127
|
Sbjct: 133 c 133
Score = 81.8 bits (41), Expect = 1e-16
Identities = 47/49 (95%)
Strand = Plus / Minus
Query: 105 ccaatcagaacatgacacgtgacagtcgtcatccaataagaacgtgaca 153
||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 66 ccaatcagaacatgacacgtgacagtcataatccaataagaacgtgaca 18
>40504_gma-MIR1520c:mirbase
Length = 140
Score = 123 bits (62), Expect = 4e-29
Identities = 116/134 (86%)
Strand = Plus / Plus
Query: 29 atgatgactgtcacatgtcatattctaattggtcaatgaaaacagcaatgcatttcatct 88
|||||||||||||| ||||||||||| |||| ||||| |||| | ||| ||||| || |
Sbjct: 1 atgatgactgtcacgtgtcatattctgattgatcaataaaaataataatacattttattt 60
Query: 89 ttcatggagttgacatccaatcagaacatgacacgtgacagtcgtcatccaataagaacg 148
|| ||||||||||||||||||||||||||||||| ||||| | |||| |||||||||||
Sbjct: 61 tttatggagttgacatccaatcagaacatgacacatgacaaacatcattcaataagaacg 120
Query: 149 tgacatatgacagt 162
||||| |||||||
Sbjct: 121 tgacacgtgacagt 134
Score = 48.1 bits (24), Expect = 2e-06
Identities = 51/60 (85%)
Strand = Plus / Minus
Query: 1 taactgtcacgtatcacgttctgattggatgatgactgtcacatgtcatattctaattgg 60
|||||||||||| ||||||||| |||| |||||| ||||| |||||| |||| |||||
Sbjct: 136 taactgtcacgtgtcacgttcttattgaatgatgtttgtcatgtgtcatgttctgattgg 77
Score = 46.1 bits (23), Expect = 8e-06
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 106 caatcagaacatgacacgtgacagtcgtcat 136
||||||||| |||||||||||||||| ||||
Sbjct: 31 caatcagaatatgacacgtgacagtcatcat 1
>40505_gma-MIR1520d:mirbase
Length = 111
Score = 93.7 bits (47), Expect = 4e-20
Identities = 95/111 (85%)
Strand = Plus / Minus
Query: 26 tggatgatgactgtcacatgtcatattctaattggtcaatgaaaacagcaatgcatttca 85
|||||||| | |||||| |||||| |||| |||| |||||||||||| ||||| ||||
Sbjct: 111 tggatgataattgtcacgtgtcatgttctgattgatcaatgaaaacaacaatgtatttgt 52
Query: 86 tctttcatggagttgacatccaatcagaacatgacacgtgacagtcgtcat 136
| |||||| ||||| ||||||||||||||||||||| |||| |||| ||||
Sbjct: 51 tttttcatagagttaacatccaatcagaacatgacatgtgatagtcatcat 1
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 106 caatcagaacatgacacgtgaca 128
|||||||||||||||||||||||
Sbjct: 78 caatcagaacatgacacgtgaca 100
Score = 40.1 bits (20), Expect = 5e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 29 atgatgactgtcacatgtcatattctaattgg 60
||||||||| ||||||||||| |||| |||||
Sbjct: 1 atgatgactatcacatgtcatgttctgattgg 32
>40503_gma-MIR1520b:mirbase
Length = 129
Score = 87.7 bits (44), Expect = 2e-18
Identities = 53/56 (94%)
Strand = Plus / Plus
Query: 100 gacatccaatcagaacatgacacgtgacagtcgtcatccaataagaacgtgacata 155
|||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct: 74 gacatccaatcagaacatgacacgtgacagtcatcatttaataagaacgtgacata 129
Score = 60.0 bits (30), Expect = 5e-10
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 108 atcagaacatgacacgtgacagtcgtcatccaataagaacgtgaca 153
||||||||||||||||| | |||| |||| ||||||||||||||||
Sbjct: 48 atcagaacatgacacgtaatagtcatcattcaataagaacgtgaca 3
Score = 46.1 bits (23), Expect = 8e-06
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 14 tcacgttctgattggatgatgactgtcacatgtcatattctaattgg 60
||||||||| ||| |||||||||||||| |||||| |||| |||||
Sbjct: 125 tcacgttcttattaaatgatgactgtcacgtgtcatgttctgattgg 79
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 3 actgtcacgtatcacgttctgattggatg 31
|||||||||| ||| ||||||||||||||
Sbjct: 104 actgtcacgtgtcatgttctgattggatg 76
>40518_gma-MIR1520q:mirbase
Length = 116
Score = 73.8 bits (37), Expect = 4e-14
Identities = 55/61 (90%)
Strand = Plus / Minus
Query: 44 tgtcatattctaattggtcaatgaaaacagcaatgcatttcatctttcatggagttgaca 103
|||||| |||| |||||||||| |||||| |||| |||||||||||| ||||||||||||
Sbjct: 107 tgtcatgttctgattggtcaataaaaacaacaatacatttcatcttttatggagttgaca 48
Query: 104 t 104
|
Sbjct: 47 t 47
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 105 ccaatcagaacatgacacgtgaca 128
|||||||||||||||||| |||||
Sbjct: 91 ccaatcagaacatgacacatgaca 114
>40508_gma-MIR1520g:mirbase
Length = 108
Score = 71.9 bits (36), Expect = 1e-13
Identities = 90/108 (83%)
Strand = Plus / Minus
Query: 29 atgatgactgtcacatgtcatattctaattggtcaatgaaaacagcaatgcatttcatct 88
||||||| |||||| |||||| |||| |||| ||||||| |||| |||| |||| ||||
Sbjct: 108 atgatgattgtcacgtgtcatgttctgattgatcaatgataacaataatgtattttatct 49
Query: 89 ttcatggagttgacatccaatcagaacatgacacgtgacagtcgtcat 136
| |||||| | | || |||| ||||||||||||||||||||| ||||
Sbjct: 48 tccatggattcaagattcaattagaacatgacacgtgacagtcatcat 1
Score = 46.1 bits (23), Expect = 8e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 29 atgatgactgtcacatgtcatattctaattg 59
|||||||||||||| |||||| |||||||||
Sbjct: 1 atgatgactgtcacgtgtcatgttctaattg 31
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 106 caatcagaacatgacacgtgaca 128
|||||||||||||||||||||||
Sbjct: 78 caatcagaacatgacacgtgaca 100
>40507_gma-MIR1520f:mirbase
Length = 103
Score = 69.9 bits (35), Expect = 6e-13
Identities = 47/51 (92%)
Strand = Plus / Minus
Query: 44 tgtcatattctaattggtcaatgaaaacagcaatgcatttcatctttcatg 94
|||||| |||| ||||||||||||||| | |||||||||||||||||||||
Sbjct: 92 tgtcatgttctgattggtcaatgaaaataacaatgcatttcatctttcatg 42
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 105 ccaatcagaacatgacacgtgaca 128
|||||||||||||||||| |||||
Sbjct: 76 ccaatcagaacatgacacatgaca 99
>40517_gma-MIR1520p:mirbase
Length = 139
Score = 65.9 bits (33), Expect = 9e-12
Identities = 51/57 (89%)
Strand = Plus / Minus
Query: 14 tcacgttctgattggatgatgactgtcacatgtcatattctaattggtcaatgaaaa 70
||||||| | ||||||||||||||||||||||| || || | |||||||||||||||
Sbjct: 134 tcacgttgttattggatgatgactgtcacatgttatgttttgattggtcaatgaaaa 78
Score = 60.0 bits (30), Expect = 5e-10
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 105 ccaatcagaacatgacacgtgacagtcgtcatccaataagaacgtgacat 154
||||||| ||||| ||| ||||||||| ||||||||||| ||||||||||
Sbjct: 88 ccaatcaaaacataacatgtgacagtcatcatccaataacaacgtgacat 137
>40516_gma-MIR1520o:mirbase
Length = 193
Score = 50.1 bits (25), Expect = 5e-07
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 3 actgtcacgtatcacgttctgattggatgatgactgtcacatgtcatattctaattg 59
|||||||| | |||| ||||||||||| |||||| |||||||||| |||||||||
Sbjct: 177 actgtcacatgtcacattctgattggacgatgacaatcacatgtcacgttctaattg 121
Score = 42.1 bits (21), Expect = 1e-04
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 5 tgtcacgtatcacgttctgattggatgatgactgtca 41
||||| || |||| ||||||||||||||| |||||||
Sbjct: 19 tgtcatgtgtcacattctgattggatgataactgtca 55
Score = 40.1 bits (20), Expect = 5e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 33 tgactgtcacatgtcatattctaattgg 60
|||||||||||||||| ||||| |||||
Sbjct: 179 tgactgtcacatgtcacattctgattgg 152
>40515_gma-MIR1520n:mirbase
Length = 96
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 106 caatcagaacatgacacgtgacagt 130
|||||||||||||||||||||||||
Sbjct: 72 caatcagaacatgacacgtgacagt 96
