miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>40729_mtr-MIR398b:mirbase
Length = 87
Score = 77.8 bits (39), Expect = 1e-15
Identities = 72/83 (86%)
Strand = Plus / Plus
Query: 5 acagggccgacccgagaccacatgaagttatcatatgtgtctaagctacacatctcgtgt 64
|||||| |||| |||||||||||||| |||||||| |||||| | || || ||| |||
Sbjct: 5 acagggtcgacatgagaccacatgaagctatcatatttgtctatgttatccaactcatgt 64
Query: 65 gttctcaggtcgcccctgctgaa 87
|||||||||||||||||||||||
Sbjct: 65 gttctcaggtcgcccctgctgaa 87
>42040_osa-MIR398b:mirbase
Length = 88
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 59 tcgtgtgttctcaggtcgcccctgc 83
|||||||||||||||||||||||||
Sbjct: 55 tcgtgtgttctcaggtcgcccctgc 79
>41667_vvi-MIR398c:mirbase
Length = 88
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 57 tctcgtgtgttctcaggtcgcccctgctg 85
|||| ||||||||||||||||||||||||
Sbjct: 53 tctcatgtgttctcaggtcgcccctgctg 81
>41666_vvi-MIR398b:mirbase
Length = 88
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 57 tctcgtgtgttctcaggtcgcccctgctg 85
|||| ||||||||||||||||||||||||
Sbjct: 53 tctcatgtgttctcaggtcgcccctgctg 81
>41447_ptc-MIR398c:mirbase
Length = 97
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 62 tgtgttctcaggtcgcccctgc 83
||||||||||||||||||||||
Sbjct: 68 tgtgttctcaggtcgcccctgc 89
>41446_ptc-MIR398b:mirbase
Length = 85
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 62 tgtgttctcaggtcgcccctgc 83
||||||||||||||||||||||
Sbjct: 56 tgtgttctcaggtcgcccctgc 77
>41191_aqc-MIR398b:mirbase
Length = 93
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 62 tgtgttctcaggtcgcccctgc 83
||||||||||||||||||||||
Sbjct: 72 tgtgttctcaggtcgcccctgc 93
>41144_tcc-MIR398a:mirbase
Length = 125
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 62 tgtgttctcaggtcgcccctgc 83
||||||||||||||||||||||
Sbjct: 85 tgtgttctcaggtcgcccctgc 106
>40382_rco-MIR398b:mirbase
Length = 126
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 62 tgtgttctcaggtcgcccctgc 83
||||||||||||||||||||||
Sbjct: 101 tgtgttctcaggtcgcccctgc 122
>41801_bdi-MIR398c:mirbase
Length = 131
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 62 tgtgttctcaggtcgcccctg 82
|||||||||||||||||||||
Sbjct: 87 tgtgttctcaggtcgcccctg 107
>41799_bdi-MIR398a:mirbase
Length = 150
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 62 tgtgttctcaggtcgcccctg 82
|||||||||||||||||||||
Sbjct: 96 tgtgttctcaggtcgcccctg 116
>40091_ath-MIR398c:mirbase
Length = 115
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 62 tgtgttctcaggtcgcccctgctga 86
|||||||||||||| ||||||||||
Sbjct: 85 tgtgttctcaggtcacccctgctga 109
>40090_ath-MIR398b:mirbase
Length = 116
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 62 tgtgttctcaggtcgcccctgctga 86
|||||||||||||| ||||||||||
Sbjct: 86 tgtgttctcaggtcacccctgctga 110
>39882_aly-MIR398b:mirbase
Length = 142
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 62 tgtgttctcaggtcgcccctgctga 86
|||||||||||||| ||||||||||
Sbjct: 91 tgtgttctcaggtcacccctgctga 115
>42645_tae-MIR398:mirbase
Length = 120
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 62 tgtgttctcaggtcgcccctgctg 85
||||||||||||||||||| ||||
Sbjct: 85 tgtgttctcaggtcgcccccgctg 108
>42818_zma-MIR398b:mirbase
Length = 108
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 62 tgtgttctcaggtcgcccc 80
|||||||||||||||||||
Sbjct: 87 tgtgttctcaggtcgcccc 105
>42817_zma-MIR398a:mirbase
Length = 140
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 62 tgtgttctcaggtcgcccc 80
|||||||||||||||||||
Sbjct: 119 tgtgttctcaggtcgcccc 137
>42588_sbi-MIR398:mirbase
Length = 109
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 62 tgtgttctcaggtcgcccc 80
|||||||||||||||||||
Sbjct: 88 tgtgttctcaggtcgcccc 106
