miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>40744_mtr-MIR399n:mirbase
Length = 100
Score = 117 bits (59), Expect = 1e-27
Identities = 89/100 (89%), Gaps = 8/100 (8%)
Strand = Plus / Plus
Query: 1 agtcatagggcatgtctctattggcaggtg--------atatttcatttgacttagaggc 52
|||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 1 agtcatagggcatgtctctattggcaggtgatatggtgatatttcatttgactttaaggc 60
Query: 53 tctagaaattcacttgccaaaggagagctgccctgcgagt 92
|||||||||||||||||||||||||||||||||| |||||
Sbjct: 61 tctagaaattcacttgccaaaggagagctgccctacgagt 100
>40734_mtr-MIR399d:mirbase
Length = 129
Score = 109 bits (55), Expect = 3e-25
Identities = 88/100 (88%), Gaps = 8/100 (8%)
Strand = Plus / Plus
Query: 1 agtcatagggcatgtctctattggcaggtg--------atatttcatttgacttagaggc 52
|||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 16 agtcatagggcatgtctctattggcaggtgatatggtgatatttcatttgactttaaggc 75
Query: 53 tctagaaattcacttgccaaaggagagctgccctgcgagt 92
|||| ||||||||||||||||||||||||||||| |||||
Sbjct: 76 tctaaaaattcacttgccaaaggagagctgccctacgagt 115
>40732_mtr-MIR399b:mirbase
Length = 112
Score = 99.6 bits (50), Expect = 3e-22
Identities = 62/66 (93%)
Strand = Plus / Plus
Query: 27 ggtgatatttcatttgacttagaggctctagaaattcacttgccaaaggagagctgccct 86
||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct: 33 ggtgatatttcatttgaattagaggcttcagaaattcacttgccaaaggagagctgccct 92
Query: 87 gcgagt 92
| ||||
Sbjct: 93 gtgagt 98
>40743_mtr-MIR399m:mirbase
Length = 85
Score = 77.8 bits (39), Expect = 1e-15
Identities = 75/86 (87%), Gaps = 7/86 (8%)
Strand = Plus / Plus
Query: 1 agtcatagggcatgtctctattggcaggtgatatttcatttgacttagaggctctagaaa 60
|||||||||||||||||||||||||||||||||| ||| | |||||||||||
Sbjct: 1 agtcatagggcatgtctctattggcaggtgatatag----tgatat---ggctctagaaa 53
Query: 61 ttcacttgccaaaggagagctgccct 86
||||||||||||||||||||||||||
Sbjct: 54 ttcacttgccaaaggagagctgccct 79
>40386_rco-MIR399d:mirbase
Length = 103
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 65 cttgccaaaggagagctgccctg 87
|||||||||||||||||||||||
Sbjct: 76 cttgccaaaggagagctgccctg 98
>42822_zma-MIR399d:mirbase
Length = 125
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 67 tgccaaaggagagctgccctgc 88
||||||||||||||||||||||
Sbjct: 86 tgccaaaggagagctgccctgc 107
>42590_sbi-MIR399b:mirbase
Length = 121
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 67 tgccaaaggagagctgccctgc 88
||||||||||||||||||||||
Sbjct: 82 tgccaaaggagagctgccctgc 103
>42049_osa-MIR399i:mirbase
Length = 116
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 67 tgccaaaggagagctgccctgc 88
||||||||||||||||||||||
Sbjct: 86 tgccaaaggagagctgccctgc 107
>40094_ath-MIR399c:mirbase
Length = 114
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 62 tcacttgccaaaggagagctgccctg 87
|||||||||||||||||| |||||||
Sbjct: 79 tcacttgccaaaggagagttgccctg 104
>39886_aly-MIR399c:mirbase
Length = 125
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 62 tcacttgccaaaggagagctgccctg 87
|||||||||||||||||| |||||||
Sbjct: 84 tcacttgccaaaggagagttgccctg 109
>42592_sbi-MIR399d:mirbase
Length = 205
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 67 tgccaaaggagagctgccctgcga 90
||||||||||||| ||||||||||
Sbjct: 166 tgccaaaggagagttgccctgcga 189
>42044_osa-MIR399d:mirbase
Length = 286
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 67 tgccaaaggagagctgccctgcga 90
||||||||||||| ||||||||||
Sbjct: 256 tgccaaaggagagttgccctgcga 279
>41669_vvi-MIR399b:mirbase
Length = 117
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 64 acttgccaaaggagagctgccctg 87
|||||||||||||||| |||||||
Sbjct: 84 acttgccaaaggagagttgccctg 107
>41154_tcc-MIR399i:mirbase
Length = 157
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 64 acttgccaaaggagagctgccctg 87
|||||||||||||||| |||||||
Sbjct: 114 acttgccaaaggagagttgccctg 137
>40747_mtr-MIR399q:mirbase
Length = 174
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 64 acttgccaaaggagagctgc 83
||||||||||||||||||||
Sbjct: 135 acttgccaaaggagagctgc 154
>40746_mtr-MIR399p:mirbase
Length = 79
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 64 acttgccaaaggagagctgccctg 87
|||||||||||||||| |||||||
Sbjct: 51 acttgccaaaggagagttgccctg 74
>40742_mtr-MIR399l:mirbase
Length = 79
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 64 acttgccaaaggagagctgccctg 87
|||||||||||||||| |||||||
Sbjct: 51 acttgccaaaggagagttgccctg 74
