miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>40775_mtr-MIR2111r:mirbase
Length = 134
Score = 103 bits (52), Expect = 3e-23
Identities = 107/124 (86%), Gaps = 1/124 (0%)
Strand = Plus / Plus
Query: 1 atattgggtggggatgggataatctgcatcctgaggtttagaacaatagtttcttcattt 60
|||||||||| ||||||||||||||||||||||||||||| |||||||||| | | |||
Sbjct: 2 atattgggtgaggatgggataatctgcatcctgaggtttaaaacaatagttacgtaatta 61
Query: 61 ccttaaaaagaaaatagttgcgtaattgtttctaagccttggattgtagattattttttc 120
|| |||| ||| ||||| | |||| |||||||||||||||| || ||||||| |||||
Sbjct: 62 cccctaaaa-aaattagttacataatcgtttctaagccttggagtgcagattatcttttc 120
Query: 121 ctta 124
||||
Sbjct: 121 ctta 124
>40770_mtr-MIR2111m:mirbase
Length = 132
Score = 83.8 bits (42), Expect = 3e-17
Identities = 103/122 (84%), Gaps = 1/122 (0%)
Strand = Plus / Plus
Query: 1 atattgggtggggatgggataatctgcatcctgaggtttagaacaatagtttcttcattt 60
|||||||||| ||||||||||||||||||||||||||||| |||||| || | | ||||
Sbjct: 1 atattgggtgaggatgggataatctgcatcctgaggtttaagacaatatttgcgtaattt 60
Query: 61 ccttaaaaagaaaatagttgcgtaattgtttctaagccttggattgtagattattttttc 120
|| ||||| ||| | ||||||||| |||||||||||| ||| || |||||| |||||
Sbjct: 61 cc-aaaaaataaataaattgcgtaatcgtttctaagcctcggagtgcggattatcttttc 119
Query: 121 ct 122
||
Sbjct: 120 ct 121
>40774_mtr-MIR2111q:mirbase
Length = 127
Score = 81.8 bits (41), Expect = 1e-16
Identities = 47/49 (95%)
Strand = Plus / Plus
Query: 1 atattgggtggggatgggataatctgcatcctgaggtttagaacaatag 49
|||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 79 atattgggtgaggatgggataatctgcatcctgaggtttaaaacaatag 127
>40760_mtr-MIR2111c:mirbase
Length = 106
Score = 67.9 bits (34), Expect = 2e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 13 gatgggataatctgcatcctgaggtttagaacaa 46
||||||||||||||||||||||||||||||||||
Sbjct: 13 gatgggataatctgcatcctgaggtttagaacaa 46
Score = 48.1 bits (24), Expect = 2e-06
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 79 tgcgtaattgtttctaagccttggattgtagattattttttccttaacatcaatgc 134
||||||||| | ||||||||||||| || ||||||| | ||||||| || ||||||
Sbjct: 51 tgcgtaattatatctaagccttggaatgcagattatctcttccttatcaccaatgc 106
>40772_mtr-MIR2111o:mirbase
Length = 106
Score = 61.9 bits (31), Expect = 1e-10
Identities = 49/55 (89%)
Strand = Plus / Plus
Query: 79 tgcgtaattgtttctaagccttggattgtagattattttttccttaacatcaatg 133
||||||||||| ||||||||||||| || ||||||| | |||||||||| |||||
Sbjct: 51 tgcgtaattgtatctaagccttggagtgcagattatctcttccttaacaccaatg 105
Score = 56.0 bits (28), Expect = 7e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 12 ggatgggataatctgcatcctgaggtttagaa 43
|||| |||||||||||||||||||||||||||
Sbjct: 12 ggataggataatctgcatcctgaggtttagaa 43
>40765_mtr-MIR2111h:mirbase
Length = 107
Score = 61.9 bits (31), Expect = 1e-10
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 13 gatgggataatctgcatcctgaggtttagaacaat 47
|||| ||||||||||||||||||||||||||||||
Sbjct: 13 gatgagataatctgcatcctgaggtttagaacaat 47
>40768_mtr-MIR2111k:mirbase
Length = 106
Score = 60.0 bits (30), Expect = 4e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 17 ggataatctgcatcctgaggtttagaacaa 46
||||||||||||||||||||||||||||||
Sbjct: 17 ggataatctgcatcctgaggtttagaacaa 46
>40771_mtr-MIR2111n:mirbase
Length = 393
Score = 56.0 bits (28), Expect = 7e-09
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 79 tgcgtaattgtttctaagccttggattgtagattattttttccttaac 126
||||||||||| ||||||||||||| || ||||||| | |||||||||
Sbjct: 8 tgcgtaattgtatctaagccttggagtgcagattatctcttccttaac 55
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 18 gataatctgcatcctgaggttta 40
|||||||||||||||||||||||
Sbjct: 352 gataatctgcatcctgaggttta 374
>40761_mtr-MIR2111d:mirbase
Length = 152
Score = 56.0 bits (28), Expect = 7e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 12 ggatgggataatctgcatcctgaggtttagaa 43
|||| |||||||||||||||||||||||||||
Sbjct: 105 ggataggataatctgcatcctgaggtttagaa 136
>40762_mtr-MIR2111e:mirbase
Length = 102
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 18 gataatctgcatcctgaggtttagaacaata 48
||||||||||||||||||||||| |||||||
Sbjct: 18 gataatctgcatcctgaggtttataacaata 48
>40647_lja-MIR2111:mirbase
Length = 153
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 20 taatctgcatcctgaggtttagaacaatag 49
||||||||||||||||||||| ||||||||
Sbjct: 42 taatctgcatcctgaggtttaaaacaatag 71
>40776_mtr-MIR2111s:mirbase
Length = 107
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 20 taatctgcatcctgaggtttagaacaata 48
||||||||||||||||||||| |||||||
Sbjct: 21 taatctgcatcctgaggtttaaaacaata 49
>40758_mtr-MIR2111a:mirbase
Length = 310
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 13 gatgggataatctgcatcctgaggtttag 41
|||| ||||||||||||||||||||||||
Sbjct: 282 gatgagataatctgcatcctgaggtttag 310
>40769_mtr-MIR2111l:mirbase
Length = 199
Score = 48.1 bits (24), Expect = 2e-06
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 1 atattgggtggggatgggataatctgcatcctgaggttta 40
||||||||| |||| |||||||||||||||||||||||
Sbjct: 141 atattgggtaaggattagataatctgcatcctgaggttta 180
>40767_mtr-MIR2111j:mirbase
Length = 103
Score = 48.1 bits (24), Expect = 2e-06
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 1 atattgggtggggatgggataatctgcatcctgaggttta 40
||||||||| |||| |||||||||||||||||||||||
Sbjct: 1 atattgggtaaggattagataatctgcatcctgaggttta 40
>40766_mtr-MIR2111i:mirbase
Length = 166
Score = 48.1 bits (24), Expect = 2e-06
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 1 atattgggtggggatgggataatctgcatcctgaggttta 40
||||||||| |||| |||||||||||||||||||||||
Sbjct: 121 atattgggtaaggattagataatctgcatcctgaggttta 160
>40759_mtr-MIR2111b:mirbase
Length = 166
Score = 48.1 bits (24), Expect = 2e-06
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 1 atattgggtggggatgggataatctgcatcctgaggttta 40
||||||||| |||| |||||||||||||||||||||||
Sbjct: 121 atattgggtaaggattagataatctgcatcctgaggttta 160
Score = 40.1 bits (20), Expect = 4e-04
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 91 tctaagccttggattgtagattattttttccttaacatcaatgc 134
||||||||||||| || ||||||| | ||||||| || ||||||
Sbjct: 6 tctaagccttggaatgcagattatctcttccttatcaccaatgc 49
>41161_tcc-MIR2111:mirbase
Length = 111
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 20 taatctgcatcctgaggtttaga 42
|||||||||||||||||||||||
Sbjct: 21 taatctgcatcctgaggtttaga 43
>40773_mtr-MIR2111p:mirbase
Length = 107
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 20 taatctgcatcctgaggtttaga 42
|||||||||||||||||||||||
Sbjct: 21 taatctgcatcctgaggtttaga 43
>41698_vvi-MIR2111:mirbase
Length = 108
Score = 44.1 bits (22), Expect = 3e-05
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 1 atattgggtggggatgggataatctgcatcctgaggtttaga 42
||||||||| |||| || |||||||||||||||||| ||||
Sbjct: 4 atattgggtcaggatcgggtaatctgcatcctgaggtctaga 45
>39946_aly-MIR2111a:mirbase
Length = 141
Score = 44.1 bits (22), Expect = 3e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 7 ggtggggatgggataatctgcatcctgaggttta 40
|||| |||| || |||||||||||||||||||||
Sbjct: 6 ggtgaggatcgggtaatctgcatcctgaggttta 39
>40764_mtr-MIR2111g:mirbase
Length = 183
Score = 42.1 bits (21), Expect = 1e-04
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 78 ttgcgtaattgtttctaagccttggattgtagattattttttcct 122
||||||||| |||||||||||| ||| || |||||| |||||||
Sbjct: 3 ttgcgtaatcgtttctaagcctcggagtgcggattatcttttcct 47
>40328_bra-MIR2111b:mirbase
Length = 113
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 taatctgcatcctgaggttta 40
|||||||||||||||||||||
Sbjct: 14 taatctgcatcctgaggttta 34
>40327_bra-MIR2111a:mirbase
Length = 161
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 taatctgcatcctgaggttta 40
|||||||||||||||||||||
Sbjct: 29 taatctgcatcctgaggttta 49
>40303_bna-MIR2111b:mirbase
Length = 119
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 taatctgcatcctgaggttta 40
|||||||||||||||||||||
Sbjct: 20 taatctgcatcctgaggttta 40
>40302_bna-MIR2111a:mirbase
Length = 151
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 taatctgcatcctgaggttta 40
|||||||||||||||||||||
Sbjct: 27 taatctgcatcctgaggttta 47
>40215_ath-MIR2111b:mirbase
Length = 167
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 taatctgcatcctgaggttta 40
|||||||||||||||||||||
Sbjct: 45 taatctgcatcctgaggttta 65
>40214_ath-MIR2111a:mirbase
Length = 159
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 taatctgcatcctgaggttta 40
|||||||||||||||||||||
Sbjct: 28 taatctgcatcctgaggttta 48
>39947_aly-MIR2111b:mirbase
Length = 123
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 taatctgcatcctgaggttta 40
|||||||||||||||||||||
Sbjct: 20 taatctgcatcctgaggttta 40
