miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>40759_mtr-MIR2111b:mirbase
Length = 166
Score = 204 bits (103), Expect = 2e-53
Identities = 151/165 (91%), Gaps = 4/165 (2%)
Strand = Plus / Plus
Query: 22 tctaagccttgggatgctgattatctcttccttatcaccaatgcaaaactatgaaatcaa 81
|||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 6 tctaagccttggaatgcagattatctcttccttatcaccaatgcaaaact--gaaatcaa 63
Query: 82 tttgatatagtttccattttacattagagcaatatgtcgtcatgatagaattggtagaaa 141
|||||| ||||||||||| |||||||| ||||||||||||||| || | ||||||||
Sbjct: 64 cttgata--gtttccattttctattagagctatatgtcgtcatgatggagtcggtagaaa 121
Query: 142 tattgggtaaggattagataatctgcatcctgaggtttaaagcaa 186
||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 122 tattgggtaaggattagataatctgcatcctgaggtttatagcaa 166
>40766_mtr-MIR2111i:mirbase
Length = 166
Score = 145 bits (73), Expect = 1e-35
Identities = 145/167 (86%), Gaps = 4/167 (2%)
Strand = Plus / Plus
Query: 20 tatctaagccttgggatgctgattatctcttccttatcaccaatgcaaaactatgaaatc 79
|||||||||||| | |||| ||||||||||||||||||||||||||| ||| ||||||
Sbjct: 4 tatctaagccttagaatgcagattatctcttccttatcaccaatgcagaac--tgaaata 61
Query: 80 aatttgatatagtttccattttacattagagcaatatgtcgtcatgatagaattggtaga 139
| ||| |||||||||||||| || |||||||||| |||| ||| || | | |||| |
Sbjct: 62 atcttg--atagtttccattttccaatagagcaataggtcgccattatgtagtcggtata 119
Query: 140 aatattgggtaaggattagataatctgcatcctgaggtttaaagcaa 186
||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 120 aatattgggtaaggattagataatctgcatcctgaggtttatagcaa 166
>40768_mtr-MIR2111k:mirbase
Length = 106
Score = 129 bits (65), Expect = 9e-31
Identities = 65/65 (100%)
Strand = Plus / Plus
Query: 1 aacaacagatgcgtaattctatctaagccttgggatgctgattatctcttccttatcacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42 aacaacagatgcgtaattctatctaagccttgggatgctgattatctcttccttatcacc 101
Query: 61 aatgc 65
|||||
Sbjct: 102 aatgc 106
Score = 48.1 bits (24), Expect = 3e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 153 gattagataatctgcatcctgaggttta 180
|||| |||||||||||||||||||||||
Sbjct: 13 gattggataatctgcatcctgaggttta 40
>40771_mtr-MIR2111n:mirbase
Length = 393
Score = 127 bits (64), Expect = 3e-30
Identities = 97/108 (89%)
Strand = Plus / Plus
Query: 91 gtttccattttacattagagcaatatgtcgtcatgatagaattggtagaaatattgggta 150
||||||||||| | ||||||||||| ||| || |||| || | |||| || |||||||||
Sbjct: 285 gtttccattttcctttagagcaataagtcttcttgatggagtcggtataattattgggta 344
Query: 151 aggattagataatctgcatcctgaggtttaaagcaatattgtagttgt 198
|||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 345 aggattagataatctgcatcctgaggtttatagcaatattgtagttgt 392
Score = 63.9 bits (32), Expect = 4e-11
Identities = 47/52 (90%)
Strand = Plus / Plus
Query: 4 aacagatgcgtaattctatctaagccttgggatgctgattatctcttcctta 55
||||| ||||||||| |||||||||||||| ||| ||||||||||||||||
Sbjct: 2 aacagctgcgtaattgtatctaagccttggagtgcagattatctcttcctta 53
>40767_mtr-MIR2111j:mirbase
Length = 103
Score = 101 bits (51), Expect = 2e-22
Identities = 57/59 (96%)
Strand = Plus / Plus
Query: 141 atattgggtaaggattagataatctgcatcctgaggtttaaagcaatattgtagttgtc 199
|||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct: 1 atattgggtaaggattagataatctgcatcctgaggtttatagcaatattttagttgtc 59
>40760_mtr-MIR2111c:mirbase
Length = 106
Score = 97.6 bits (49), Expect = 3e-21
Identities = 61/65 (93%)
Strand = Plus / Plus
Query: 1 aacaacagatgcgtaattctatctaagccttgggatgctgattatctcttccttatcacc 60
||||||| |||||||||| |||||||||||||| |||| |||||||||||||||||||||
Sbjct: 42 aacaacaaatgcgtaattatatctaagccttggaatgcagattatctcttccttatcacc 101
Query: 61 aatgc 65
|||||
Sbjct: 102 aatgc 106
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 158 gataatctgcatcctgaggttta 180
|||||||||||||||||||||||
Sbjct: 18 gataatctgcatcctgaggttta 40
>40762_mtr-MIR2111e:mirbase
Length = 102
Score = 83.8 bits (42), Expect = 5e-17
Identities = 54/58 (93%)
Strand = Plus / Plus
Query: 142 tattgggtaaggattagataatctgcatcctgaggtttaaagcaatattgtagttgtc 199
||||||||||||||||||||||||||||||||||||||| | ||||||| ||| ||||
Sbjct: 2 tattgggtaaggattagataatctgcatcctgaggtttataacaatattttagctgtc 59
>40765_mtr-MIR2111h:mirbase
Length = 107
Score = 77.8 bits (39), Expect = 3e-15
Identities = 54/59 (91%)
Strand = Plus / Plus
Query: 8 gatgcgtaattctatctaagccttgggatgctgattatctcttccttatcaccaatgca 66
||||||||| | |||||||||||| | |||| |||||||||||||||||||||||||||
Sbjct: 49 gatgcgtaactgtatctaagccttagaatgcagattatctcttccttatcaccaatgca 107
Score = 48.1 bits (24), Expect = 3e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 157 agataatctgcatcctgaggttta 180
||||||||||||||||||||||||
Sbjct: 17 agataatctgcatcctgaggttta 40
>40772_mtr-MIR2111o:mirbase
Length = 106
Score = 73.8 bits (37), Expect = 4e-14
Identities = 55/61 (90%)
Strand = Plus / Plus
Query: 4 aacagatgcgtaattctatctaagccttgggatgctgattatctcttccttatcaccaat 63
||||| ||||||||| |||||||||||||| ||| |||||||||||||||| |||||||
Sbjct: 45 aacagctgcgtaattgtatctaagccttggagtgcagattatctcttccttaacaccaat 104
Query: 64 g 64
|
Sbjct: 105 g 105
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 158 gataatctgcatcctgaggttta 180
|||||||||||||||||||||||
Sbjct: 18 gataatctgcatcctgaggttta 40
>40764_mtr-MIR2111g:mirbase
Length = 183
Score = 67.9 bits (34), Expect = 3e-12
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 139 aaatattgggtaaggattagataatctgcatcctgaggttta 180
|||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 123 aaatattgggtaaggattagataacctgcattctgaggttta 164
Score = 44.1 bits (22), Expect = 4e-05
Identities = 56/66 (84%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 22 tctaagccttgggatgctgattatctcttccttatcaccaatgcaaaactatgaaatcaa 81
||||||||| || ||| |||||||| ||||| |||||||||||| || ||||||||||
Sbjct: 16 tctaagcctcggagtgcggattatcttttcct-atcaccaatgcagaataatgaaatcaa 74
Query: 82 tttgat 87
|||||
Sbjct: 75 attgat 80
>40775_mtr-MIR2111r:mirbase
Length = 134
Score = 63.9 bits (32), Expect = 4e-11
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 141 atattgggtaaggattagataatctgcatcctgaggtttaaagcaata 188
||||||||| ||||| ||||||||||||||||||||||||| |||||
Sbjct: 2 atattgggtgaggatgggataatctgcatcctgaggtttaaaacaata 49
Score = 48.1 bits (24), Expect = 3e-06
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 22 tctaagccttgggatgctgattatctcttccttatcaccaatgc 65
|||||||||||| ||| |||||||| |||||||||||| ||||
Sbjct: 91 tctaagccttggagtgcagattatcttttccttatcacctatgc 134
>40774_mtr-MIR2111q:mirbase
Length = 127
Score = 63.9 bits (32), Expect = 4e-11
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 141 atattgggtaaggattagataatctgcatcctgaggtttaaagcaata 188
||||||||| ||||| ||||||||||||||||||||||||| |||||
Sbjct: 79 atattgggtgaggatgggataatctgcatcctgaggtttaaaacaata 126
>40770_mtr-MIR2111m:mirbase
Length = 132
Score = 60.0 bits (30), Expect = 7e-10
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 141 atattgggtaaggattagataatctgcatcctgaggtttaaagcaatatt 190
||||||||| ||||| |||||||||||||||||||||||| |||||||
Sbjct: 1 atattgggtgaggatgggataatctgcatcctgaggtttaagacaatatt 50
>40776_mtr-MIR2111s:mirbase
Length = 107
Score = 54.0 bits (27), Expect = 4e-08
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 142 tattgggtaaggattagataatctgcatcctgaggtttaaagcaata 188
|||||| ||||||| | ||||||||||||||||||||||| |||||
Sbjct: 3 tattggttaaggatccggtaatctgcatcctgaggtttaaaacaata 49
Score = 42.1 bits (21), Expect = 2e-04
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 32 gggatgctgattatctcttccttatcaccaatg 64
||||||||||||| || |||||||| |||||||
Sbjct: 71 gggatgctgattaccttttccttatgaccaatg 103
>40647_lja-MIR2111:mirbase
Length = 153
Score = 52.0 bits (26), Expect = 2e-07
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 151 aggattagataatctgcatcctgaggtttaaagcaata 188
||||| || ||||||||||||||||||||||| |||||
Sbjct: 33 aggatcaggtaatctgcatcctgaggtttaaaacaata 70
>40327_bra-MIR2111a:mirbase
Length = 161
Score = 50.1 bits (25), Expect = 6e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 160 taatctgcatcctgaggtttaaagc 184
|||||||||||||||||||||||||
Sbjct: 29 taatctgcatcctgaggtttaaagc 53
>40302_bna-MIR2111a:mirbase
Length = 151
Score = 50.1 bits (25), Expect = 6e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 160 taatctgcatcctgaggtttaaagc 184
|||||||||||||||||||||||||
Sbjct: 27 taatctgcatcctgaggtttaaagc 51
>40214_ath-MIR2111a:mirbase
Length = 159
Score = 50.1 bits (25), Expect = 6e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 160 taatctgcatcctgaggtttaaagc 184
|||||||||||||||||||||||||
Sbjct: 28 taatctgcatcctgaggtttaaagc 52
>39946_aly-MIR2111a:mirbase
Length = 141
Score = 50.1 bits (25), Expect = 6e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 160 taatctgcatcctgaggtttaaagc 184
|||||||||||||||||||||||||
Sbjct: 19 taatctgcatcctgaggtttaaagc 43
>40773_mtr-MIR2111p:mirbase
Length = 107
Score = 48.1 bits (24), Expect = 3e-06
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 143 attgggtaaggattagataatctgcatcctgaggtttaaagcaa 186
||||| ||||||| | ||||||||||||||||||||| |||||
Sbjct: 4 attggttaaggatagggtaatctgcatcctgaggtttagagcaa 47
>40763_mtr-MIR2111f:mirbase
Length = 134
Score = 48.1 bits (24), Expect = 3e-06
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 141 atattgggtaaggattagataatctgcatcctgaggttta 180
||||||||| |||| |||||||||||||||||||||||
Sbjct: 1 atattgggtggggatgggataatctgcatcctgaggttta 40
>40758_mtr-MIR2111a:mirbase
Length = 310
Score = 48.1 bits (24), Expect = 3e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 157 agataatctgcatcctgaggttta 180
||||||||||||||||||||||||
Sbjct: 286 agataatctgcatcctgaggttta 309
>40761_mtr-MIR2111d:mirbase
Length = 152
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 158 gataatctgcatcctgaggttta 180
|||||||||||||||||||||||
Sbjct: 111 gataatctgcatcctgaggttta 133
>40328_bra-MIR2111b:mirbase
Length = 113
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 160 taatctgcatcctgaggtttaaa 182
|||||||||||||||||||||||
Sbjct: 14 taatctgcatcctgaggtttaaa 36
>40303_bna-MIR2111b:mirbase
Length = 119
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 160 taatctgcatcctgaggtttaaa 182
|||||||||||||||||||||||
Sbjct: 20 taatctgcatcctgaggtttaaa 42
>40215_ath-MIR2111b:mirbase
Length = 167
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 160 taatctgcatcctgaggtttaaa 182
|||||||||||||||||||||||
Sbjct: 45 taatctgcatcctgaggtttaaa 67
>39947_aly-MIR2111b:mirbase
Length = 123
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 160 taatctgcatcctgaggtttaaa 182
|||||||||||||||||||||||
Sbjct: 20 taatctgcatcctgaggtttaaa 42
>41698_vvi-MIR2111:mirbase
Length = 108
Score = 44.1 bits (22), Expect = 4e-05
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 140 aatattgggtaaggattagataatctgcatcctgaggt 177
|||||||||| ||||| | ||||||||||||||||||
Sbjct: 3 aatattgggtcaggatcgggtaatctgcatcctgaggt 40
>41161_tcc-MIR2111:mirbase
Length = 111
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 160 taatctgcatcctgaggttta 180
|||||||||||||||||||||
Sbjct: 21 taatctgcatcctgaggttta 41
