miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>40760_mtr-MIR2111c:mirbase
Length = 106
Score = 129 bits (65), Expect = 4e-31
Identities = 83/89 (93%)
Strand = Plus / Plus
Query: 17 ggataatctgcatcctgaggtttagaataacagctgcgtaattgtatctaagccttggag 76
||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||
Sbjct: 17 ggataatctgcatcctgaggtttagaacaacaaatgcgtaattatatctaagccttggaa 76
Query: 77 tgcagattatctcttccttaacaccaatg 105
|||||||||||||||||||| ||||||||
Sbjct: 77 tgcagattatctcttccttatcaccaatg 105
>40768_mtr-MIR2111k:mirbase
Length = 106
Score = 121 bits (61), Expect = 1e-28
Identities = 82/89 (92%)
Strand = Plus / Plus
Query: 17 ggataatctgcatcctgaggtttagaataacagctgcgtaattgtatctaagccttggag 76
||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||
Sbjct: 17 ggataatctgcatcctgaggtttagaacaacagatgcgtaattctatctaagccttggga 76
Query: 77 tgcagattatctcttccttaacaccaatg 105
||| |||||||||||||||| ||||||||
Sbjct: 77 tgctgattatctcttccttatcaccaatg 105
>40761_mtr-MIR2111d:mirbase
Length = 152
Score = 117 bits (59), Expect = 2e-27
Identities = 59/59 (100%)
Strand = Plus / Plus
Query: 1 atattgagtttggataggataatctgcatcctgaggtttagaataacagctgcgtaatt 59
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 atattgagtttggataggataatctgcatcctgaggtttagaataacagctgcgtaatt 152
>40771_mtr-MIR2111n:mirbase
Length = 393
Score = 113 bits (57), Expect = 3e-26
Identities = 60/61 (98%)
Strand = Plus / Plus
Query: 44 taacagctgcgtaattgtatctaagccttggagtgcagattatctcttccttaacaccaa 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1 taacagctgcgtaattgtatctaagccttggagtgcagattatctcttccttaaccccaa 60
Query: 104 t 104
|
Sbjct: 61 t 61
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 18 gataatctgcatcctgaggttta 40
|||||||||||||||||||||||
Sbjct: 352 gataatctgcatcctgaggttta 374
>40765_mtr-MIR2111h:mirbase
Length = 107
Score = 111 bits (56), Expect = 1e-25
Identities = 80/88 (90%)
Strand = Plus / Plus
Query: 18 gataatctgcatcctgaggtttagaataacagctgcgtaattgtatctaagccttggagt 77
|||||||||||||||||||||||||| || | ||||||| |||||||||||||| || |
Sbjct: 18 gataatctgcatcctgaggtttagaacaatcgatgcgtaactgtatctaagccttagaat 77
Query: 78 gcagattatctcttccttaacaccaatg 105
||||||||||||||||||| ||||||||
Sbjct: 78 gcagattatctcttccttatcaccaatg 105
>40769_mtr-MIR2111l:mirbase
Length = 199
Score = 73.8 bits (37), Expect = 2e-14
Identities = 55/61 (90%)
Strand = Plus / Plus
Query: 45 aacagctgcgtaattgtatctaagccttggagtgcagattatctcttccttaacaccaat 104
||||| ||||||||| |||||||||||||| ||| |||||||||||||||| |||||||
Sbjct: 4 aacagatgcgtaattctatctaagccttgggatgctgattatctcttccttatcaccaat 63
Query: 105 g 105
|
Sbjct: 64 g 64
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 18 gataatctgcatcctgaggttta 40
|||||||||||||||||||||||
Sbjct: 158 gataatctgcatcctgaggttta 180
>40766_mtr-MIR2111i:mirbase
Length = 166
Score = 69.9 bits (35), Expect = 4e-13
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 59 tgtatctaagccttggagtgcagattatctcttccttaacaccaatg 105
|||||||||||||| || |||||||||||||||||||| ||||||||
Sbjct: 2 tgtatctaagccttagaatgcagattatctcttccttatcaccaatg 48
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 18 gataatctgcatcctgaggttta 40
|||||||||||||||||||||||
Sbjct: 138 gataatctgcatcctgaggttta 160
>40759_mtr-MIR2111b:mirbase
Length = 166
Score = 69.9 bits (35), Expect = 4e-13
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 63 tctaagccttggagtgcagattatctcttccttaacaccaatg 105
||||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 6 tctaagccttggaatgcagattatctcttccttatcaccaatg 48
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 18 gataatctgcatcctgaggttta 40
|||||||||||||||||||||||
Sbjct: 138 gataatctgcatcctgaggttta 160
>40775_mtr-MIR2111r:mirbase
Length = 134
Score = 61.9 bits (31), Expect = 9e-11
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 63 tctaagccttggagtgcagattatctcttccttaacacc 101
|||||||||||||||||||||||||| ||||||| ||||
Sbjct: 91 tctaagccttggagtgcagattatcttttccttatcacc 129
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 12 ggataggataatctgcatcctgaggttta 40
|||| ||||||||||||||||||||||||
Sbjct: 13 ggatgggataatctgcatcctgaggttta 41
>40763_mtr-MIR2111f:mirbase
Length = 134
Score = 61.9 bits (31), Expect = 9e-11
Identities = 49/55 (89%)
Strand = Plus / Plus
Query: 51 tgcgtaattgtatctaagccttggagtgcagattatctcttccttaacaccaatg 105
||||||||||| ||||||||||||| || ||||||| | |||||||||| |||||
Sbjct: 79 tgcgtaattgtttctaagccttggattgtagattattttttccttaacatcaatg 133
Score = 56.0 bits (28), Expect = 5e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 12 ggataggataatctgcatcctgaggtttagaa 43
|||| |||||||||||||||||||||||||||
Sbjct: 12 ggatgggataatctgcatcctgaggtttagaa 43
>40773_mtr-MIR2111p:mirbase
Length = 107
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 12 ggataggataatctgcatcctgaggtttaga 42
||||||| |||||||||||||||||||||||
Sbjct: 13 ggatagggtaatctgcatcctgaggtttaga 43
>40774_mtr-MIR2111q:mirbase
Length = 127
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 12 ggataggataatctgcatcctgaggttta 40
|||| ||||||||||||||||||||||||
Sbjct: 90 ggatgggataatctgcatcctgaggttta 118
>40770_mtr-MIR2111m:mirbase
Length = 132
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 12 ggataggataatctgcatcctgaggttta 40
|||| ||||||||||||||||||||||||
Sbjct: 12 ggatgggataatctgcatcctgaggttta 40
>40758_mtr-MIR2111a:mirbase
Length = 310
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 18 gataatctgcatcctgaggtttag 41
||||||||||||||||||||||||
Sbjct: 287 gataatctgcatcctgaggtttag 310
>41161_tcc-MIR2111:mirbase
Length = 111
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 20 taatctgcatcctgaggtttaga 42
|||||||||||||||||||||||
Sbjct: 21 taatctgcatcctgaggtttaga 43
>40767_mtr-MIR2111j:mirbase
Length = 103
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 18 gataatctgcatcctgaggttta 40
|||||||||||||||||||||||
Sbjct: 18 gataatctgcatcctgaggttta 40
>40762_mtr-MIR2111e:mirbase
Length = 102
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 18 gataatctgcatcctgaggttta 40
|||||||||||||||||||||||
Sbjct: 18 gataatctgcatcctgaggttta 40
>40776_mtr-MIR2111s:mirbase
Length = 107
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 taatctgcatcctgaggttta 40
|||||||||||||||||||||
Sbjct: 21 taatctgcatcctgaggttta 41
>40647_lja-MIR2111:mirbase
Length = 153
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 taatctgcatcctgaggttta 40
|||||||||||||||||||||
Sbjct: 42 taatctgcatcctgaggttta 62
>40328_bra-MIR2111b:mirbase
Length = 113
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 taatctgcatcctgaggttta 40
|||||||||||||||||||||
Sbjct: 14 taatctgcatcctgaggttta 34
>40327_bra-MIR2111a:mirbase
Length = 161
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 taatctgcatcctgaggttta 40
|||||||||||||||||||||
Sbjct: 29 taatctgcatcctgaggttta 49
>40303_bna-MIR2111b:mirbase
Length = 119
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 taatctgcatcctgaggttta 40
|||||||||||||||||||||
Sbjct: 20 taatctgcatcctgaggttta 40
>40302_bna-MIR2111a:mirbase
Length = 151
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 taatctgcatcctgaggttta 40
|||||||||||||||||||||
Sbjct: 27 taatctgcatcctgaggttta 47
>40215_ath-MIR2111b:mirbase
Length = 167
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 taatctgcatcctgaggttta 40
|||||||||||||||||||||
Sbjct: 45 taatctgcatcctgaggttta 65
>40214_ath-MIR2111a:mirbase
Length = 159
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 taatctgcatcctgaggttta 40
|||||||||||||||||||||
Sbjct: 28 taatctgcatcctgaggttta 48
>39947_aly-MIR2111b:mirbase
Length = 123
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 taatctgcatcctgaggttta 40
|||||||||||||||||||||
Sbjct: 20 taatctgcatcctgaggttta 40
>39946_aly-MIR2111a:mirbase
Length = 141
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 taatctgcatcctgaggttta 40
|||||||||||||||||||||
Sbjct: 19 taatctgcatcctgaggttta 39
