miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>40782_mtr-MIR2585c:mirbase
Length = 339
Score = 456 bits (230), Expect = e-129
Identities = 314/338 (92%), Gaps = 3/338 (0%)
Strand = Plus / Plus
Query: 6 ggggtcgtttaaaaattggtccctg-tattcgctaatcattgcaaactaaccttgcaatc 64
||||| ||||||||||||||||||| |||||||||||| | |||||||| ||||||||||
Sbjct: 3 ggggtggtttaaaaattggtccctggtattcgctaatcctggcaaactagccttgcaatc 62
Query: 65 attaatcatttaaaatttcatcatttgaccaacttaatcaccgccacgtcacttatttga 124
|||||||||||||||||| || |||||||||||||||||| ||||||||||| ||||||
Sbjct: 63 attaatcatttaaaatttagtcctttgaccaacttaatcactgccacgtcactaatttga 122
Query: 125 tgacgtcgcaatcactgccacacatgaaattccaattttgcccttaagaagaggacaaaa 184
||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 123 tgatgtggcaatcactgccaaacatgaaattccaattttgcccttaagaagaggacaaaa 182
Query: 185 tattgaagaaagaattgg-aacccaggggtaaaattggaattttatgtggcgtggcagtg 243
||||||| |||| ||||| || || |||||||||||||||||| ||||||||||||| ||
Sbjct: 183 tattgaa-aaaggattggaaatcctggggtaaaattggaatttcatgtggcgtggcaatg 241
Query: 244 attaagtggggagagagacgaaattttaaatgattaaacaatgcaagggtaaattaccag 303
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 242 attaagtggggagatggacgaaattttaaatgattaaacaatgcaggggtaaattgccag 301
Query: 304 gattagcgattacagggaccaatttttaaacgacccct 341
||||||||||||||||||||||||||||||||||||||
Sbjct: 302 gattagcgattacagggaccaatttttaaacgacccct 339
Score = 77.8 bits (39), Expect = 5e-15
Identities = 69/79 (87%)
Strand = Plus / Minus
Query: 5 aggggtcgtttaaaaattggtccctgtattcgctaatcattgcaaactaaccttgcaatc 64
|||||||||||||||||||||||||||| ||||||||| | |||| || || |||| |
Sbjct: 339 aggggtcgtttaaaaattggtccctgtaatcgctaatcctggcaatttacccctgcattg 280
Query: 65 attaatcatttaaaatttc 83
||||||||||||||||||
Sbjct: 279 tttaatcatttaaaatttc 261
Score = 71.9 bits (36), Expect = 3e-13
Identities = 91/108 (84%), Gaps = 1/108 (0%)
Strand = Plus / Minus
Query: 234 cgtggcagtgattaagtggggagagagacgaaattttaaatgattaaacaatgcaagggt 293
||||||||||||||||| || | ||| ||||||||||||||||| | ||||||| |
Sbjct: 110 cgtggcagtgattaagttggtcaaaggactaaattttaaatgattaatgattgcaaggct 51
Query: 294 aaattaccaggattagcgattac-agggaccaatttttaaacgacccc 340
| || ||||||||||||| ||| |||||||||||||||||| |||||
Sbjct: 50 agtttgccaggattagcgaataccagggaccaatttttaaaccacccc 3
>40834_mtr-MIR2602b:mirbase
Length = 169
Score = 170 bits (86), Expect = 5e-43
Identities = 118/126 (93%), Gaps = 2/126 (1%)
Strand = Plus / Plus
Query: 107 gccacgtcacttatttgatgacgtcgcaatcactgccacacatgaaattccaattttgcc 166
||||||||||| ||| |||||||| ||||||||| |||||||||||||||||||||||||
Sbjct: 4 gccacgtcactaattcgatgacgtggcaatcactaccacacatgaaattccaattttgcc 63
Query: 167 cttaagaagaggacaaaatattgaagaaagaattgg-aacccaggggtaaaattggaatt 225
|||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 64 cttaagaagaggac-aaatattgaagaaagaattggaaactcaggggtaaaattggaatt 122
Query: 226 ttatgt 231
| ||||
Sbjct: 123 tcatgt 128
Score = 79.8 bits (40), Expect = 1e-15
Identities = 49/52 (94%)
Strand = Plus / Minus
Query: 112 gtcacttatttgatgacgtcgcaatcactgccacacatgaaattccaatttt 163
|||||| |||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct: 162 gtcactaatttgatgacgtggcaatcactgccatacatgaaattccaatttt 111
>40833_mtr-MIR2602a:mirbase
Length = 170
Score = 170 bits (86), Expect = 5e-43
Identities = 117/126 (92%), Gaps = 1/126 (0%)
Strand = Plus / Plus
Query: 107 gccacgtcacttatttgatgacgtcgcaatcactgccacacatgaaattccaattttgcc 166
||||| ||||| ||| |||||||| ||||||||| ||||||||||||||||||||| |||
Sbjct: 4 gccacatcactaattcgatgacgtggcaatcactaccacacatgaaattccaatttagcc 63
Query: 167 cttaagaagaggacaaaatattgaagaaagaattgg-aacccaggggtaaaattggaatt 225
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 64 cttaagaagaggacaaaatattgaagaaagaattggaaacccaggggtaaaattagaatt 123
Query: 226 ttatgt 231
| ||||
Sbjct: 124 tcatgt 129
Score = 71.9 bits (36), Expect = 3e-13
Identities = 48/52 (92%)
Strand = Plus / Minus
Query: 112 gtcacttatttgatgacgtcgcaatcactgccacacatgaaattccaatttt 163
|||||| |||||||||||| ||||||||||||| ||||||||||| ||||||
Sbjct: 163 gtcactaatttgatgacgtggcaatcactgccatacatgaaattctaatttt 112
>40781_mtr-MIR2585b:mirbase
Length = 336
Score = 167 bits (84), Expect = 7e-42
Identities = 102/108 (94%)
Strand = Plus / Plus
Query: 4 taggggtcgtttaaaaattggtccctgtattcgctaatcattgcaaactaaccttgcaat 63
|||||| ||||||||||||||||| |||||||||||||| |||||||||| ||||||||
Sbjct: 1 taggggccgtttaaaaattggtccatgtattcgctaatccttgcaaactagtcttgcaat 60
Query: 64 cattaatcatttaaaatttcatcatttgaccaacttaatcaccgccac 111
|||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 61 cattaatcatttaaaatttcatcatttgaccaacttaatcactgccac 108
Score = 167 bits (84), Expect = 7e-42
Identities = 102/108 (94%)
Strand = Plus / Plus
Query: 234 cgtggcagtgattaagtggggagagagacgaaattttaaatgattaaacaatgcaagggt 293
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct: 229 cgtggcagtgattaagtggggagagggacgaaattttaaatgattaaacaatgcagtggt 288
Query: 294 aaattaccaggattagcgattacagggaccaatttttaaacgacccct 341
|||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 gaattgtcaggattagcgattacagggaccaatttttaaacgacccct 336
Score = 143 bits (72), Expect = 1e-34
Identities = 94/100 (94%), Gaps = 1/100 (1%)
Strand = Plus / Plus
Query: 134 aatcactgccacacatgaaattccaattttgcccttaagaagaggacaaaatattgaaga 193
|||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 97 aatcactgccacacataaaattccaattctgcccttaagaagatgacaaaatattgaaga 156
Query: 194 aagaattgg-aacccaggggtaaaattggaattttatgtg 232
||||||||| |||| ||||||||||||||||||| |||||
Sbjct: 157 aagaattggaaacctaggggtaaaattggaatttcatgtg 196
Score = 93.7 bits (47), Expect = 9e-20
Identities = 131/159 (82%)
Strand = Plus / Minus
Query: 5 aggggtcgtttaaaaattggtccctgtattcgctaatcattgcaaactaaccttgcaatc 64
|||||||||||||||||||||||||||| ||||||||| | ||| | | |||| |
Sbjct: 336 aggggtcgtttaaaaattggtccctgtaatcgctaatcctgacaattcaccactgcattg 277
Query: 65 attaatcatttaaaatttcatcatttgaccaacttaatcaccgccacgtcacttatttga 124
|||||||||||||||||| || | || |||||||||| ||||||||| ||||||
Sbjct: 276 tttaatcatttaaaatttcgtccctctccccacttaatcactgccacgtcaagaatttga 217
Query: 125 tgacgtcgcaatcactgccacacatgaaattccaatttt 163
|||||| ||||||||| ||||||||||||||||||||
Sbjct: 216 tgacgtgtcaatcactgttacacatgaaattccaatttt 178
Score = 73.8 bits (37), Expect = 8e-14
Identities = 105/127 (82%), Gaps = 3/127 (2%)
Strand = Plus / Minus
Query: 216 aattggaattttatgtggcgtggcagtgattaagtggggagagagacgaaattttaaatg 275
||||||||||||||||| ||||||||||||||| || | || |||||||||||||
Sbjct: 124 aattggaattttatgtg---tggcagtgattaagttggtcaaatgatgaaattttaaatg 68
Query: 276 attaaacaatgcaagggtaaattaccaggattagcgattacagggaccaatttttaaacg 335
||||| | |||||| || || | ||||||||||| |||| |||||||||||||||||
Sbjct: 67 attaatgattgcaagactagtttgcaaggattagcgaatacatggaccaatttttaaacg 8
Query: 336 accccta 342
||||||
Sbjct: 7 gccccta 1
>40784_mtr-MIR2585e:mirbase
Length = 368
Score = 123 bits (62), Expect = 1e-28
Identities = 71/74 (95%)
Strand = Plus / Plus
Query: 260 gacgaaattttaaatgattaaacaatgcaagggtaaattaccaggattagcgattacagg 319
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 287 gacgaaattttaaatgattaaacaatgcaagggtaaattgtcaggattagcgattacagg 346
Query: 320 gaccaatttttaaa 333
||| ||||||||||
Sbjct: 347 gactaatttttaaa 360
Score = 109 bits (55), Expect = 1e-24
Identities = 76/83 (91%)
Strand = Plus / Minus
Query: 260 gacgaaattttaaatgattaaacaatgcaagggtaaattaccaggattagcgattacagg 319
|||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||
Sbjct: 83 gacgaaattttaaatgattaaataatgcaaggacaaattaccaggattaacgattacagg 24
Query: 320 gaccaatttttaaacgaccccta 342
||| |||||||||| ||| ||||
Sbjct: 23 gactaatttttaaatgacgccta 1
Score = 85.7 bits (43), Expect = 2e-17
Identities = 88/103 (85%)
Strand = Plus / Minus
Query: 13 tttaaaaattggtccctgtattcgctaatcattgcaaactaaccttgcaatcattaatca 72
|||||||||| ||||||||| ||||||||| | ||| || ||||||| | |||||||
Sbjct: 360 tttaaaaattagtccctgtaatcgctaatcctgacaatttacccttgcattgtttaatca 301
Query: 73 tttaaaatttcatcatttgaccaacttaatcaccgccacgtca 115
||||||||||| || |||||||||||||||||| | |||||||
Sbjct: 300 tttaaaatttcgtcctttgaccaacttaatcactgtcacgtca 258
Score = 60.0 bits (30), Expect = 1e-09
Identities = 84/102 (82%)
Strand = Plus / Plus
Query: 4 taggggtcgtttaaaaattggtccctgtattcgctaatcattgcaaactaaccttgcaat 63
|||| ||| |||||||||| ||||||||| ||| ||||| | | || | ||||||| |
Sbjct: 1 taggcgtcatttaaaaattagtccctgtaatcgttaatcctggtaatttgtccttgcatt 60
Query: 64 cattaatcatttaaaatttcatcatttgaccaacttaatcac 105
|||||||||||||||||| || |||||| |||||||||||
Sbjct: 61 atttaatcatttaaaatttcgtcctttgacaaacttaatcac 102
>40783_mtr-MIR2585d:mirbase
Length = 368
Score = 123 bits (62), Expect = 1e-28
Identities = 71/74 (95%)
Strand = Plus / Plus
Query: 260 gacgaaattttaaatgattaaacaatgcaagggtaaattaccaggattagcgattacagg 319
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 287 gacgaaattttaaatgattaaacaatgcaagggtaaattgtcaggattagcgattacagg 346
Query: 320 gaccaatttttaaa 333
||| ||||||||||
Sbjct: 347 gactaatttttaaa 360
Score = 109 bits (55), Expect = 1e-24
Identities = 76/83 (91%)
Strand = Plus / Minus
Query: 260 gacgaaattttaaatgattaaacaatgcaagggtaaattaccaggattagcgattacagg 319
|||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||
Sbjct: 83 gacgaaattttaaatgattaaataatgcaaggacaaattaccaggattaacgattacagg 24
Query: 320 gaccaatttttaaacgaccccta 342
||| |||||||||| ||| ||||
Sbjct: 23 gactaatttttaaatgacgccta 1
Score = 85.7 bits (43), Expect = 2e-17
Identities = 88/103 (85%)
Strand = Plus / Minus
Query: 13 tttaaaaattggtccctgtattcgctaatcattgcaaactaaccttgcaatcattaatca 72
|||||||||| ||||||||| ||||||||| | ||| || ||||||| | |||||||
Sbjct: 360 tttaaaaattagtccctgtaatcgctaatcctgacaatttacccttgcattgtttaatca 301
Query: 73 tttaaaatttcatcatttgaccaacttaatcaccgccacgtca 115
||||||||||| || |||||||||||||||||| | |||||||
Sbjct: 300 tttaaaatttcgtcctttgaccaacttaatcactgtcacgtca 258
Score = 60.0 bits (30), Expect = 1e-09
Identities = 84/102 (82%)
Strand = Plus / Plus
Query: 4 taggggtcgtttaaaaattggtccctgtattcgctaatcattgcaaactaaccttgcaat 63
|||| ||| |||||||||| ||||||||| ||| ||||| | | || | ||||||| |
Sbjct: 1 taggcgtcatttaaaaattagtccctgtaatcgttaatcctggtaatttgtccttgcatt 60
Query: 64 cattaatcatttaaaatttcatcatttgaccaacttaatcac 105
|||||||||||||||||| || |||||| |||||||||||
Sbjct: 61 atttaatcatttaaaatttcgtcctttgacaaacttaatcac 102
>40985_mtr-MIR2668:mirbase
Length = 120
Score = 58.0 bits (29), Expect = 5e-09
Identities = 50/57 (87%)
Strand = Plus / Minus
Query: 290 gggtaaattaccaggattagcgattacagggaccaatttttaaacgacccctaattg 346
||||||||| |||||||| | | || | ||||||||||||||||||||||||||||
Sbjct: 84 gggtaaattgtcaggattaacaaatataaggaccaatttttaaacgacccctaattg 28
Score = 54.0 bits (27), Expect = 7e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1 aattaggggtcgtttaaaaattggtcc 27
|||||||||||||||||||||||||||
Sbjct: 29 aattaggggtcgtttaaaaattggtcc 55
