miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>40782_mtr-MIR2585c:mirbase
Length = 339
Score = 174 bits (88), Expect = 3e-44
Identities = 103/108 (95%)
Strand = Plus / Plus
Query: 229 cgtggcagtgattaagtggggagagggacgaaattttaaatgattaaacaatgcagtggt 288
||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct: 232 cgtggcaatgattaagtggggagatggacgaaattttaaatgattaaacaatgcaggggt 291
Query: 289 gaattgtcaggattagcgattacagggaccaatttttaaacgacccct 336
||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 aaattgccaggattagcgattacagggaccaatttttaaacgacccct 339
Score = 137 bits (69), Expect = 6e-33
Identities = 94/101 (93%), Gaps = 1/101 (0%)
Strand = Plus / Plus
Query: 9 gtttaaaaattggtccatg-tattcgctaatccttgcaaactagtcttgcaatcattaat 67
|||||||||||||||| || |||||||||||||| ||||||||| |||||||||||||||
Sbjct: 9 gtttaaaaattggtccctggtattcgctaatcctggcaaactagccttgcaatcattaat 68
Query: 68 catttaaaatttcatcatttgaccaacttaatcactgccac 108
|||||||||||| || ||||||||||||||||||||||||
Sbjct: 69 catttaaaatttagtcctttgaccaacttaatcactgccac 109
Score = 119 bits (60), Expect = 1e-27
Identities = 91/100 (91%), Gaps = 1/100 (1%)
Strand = Plus / Plus
Query: 97 aatcactgccacacataaaattccaattctgcccttaagaagatgacaaaatattgaaga 156
||||||||||| |||| ||||||||||| |||||||||||||| |||||||||||||| |
Sbjct: 132 aatcactgccaaacatgaaattccaattttgcccttaagaagaggacaaaatattgaa-a 190
Query: 157 aagaattggaaacctaggggtaaaattggaatttcatgtg 196
||| |||||||| | ||||||||||||||||||||||||
Sbjct: 191 aaggattggaaatcctggggtaaaattggaatttcatgtg 230
Score = 101 bits (51), Expect = 3e-22
Identities = 133/159 (83%), Gaps = 1/159 (0%)
Strand = Plus / Minus
Query: 178 aaaattggaatttcatgtgtaacagtgattgacacgtcatcaaattcttgacgtggcagt 237
|||||||||||||||||| | ||||||||| ||| |||||||||| ||||||||||||
Sbjct: 161 aaaattggaatttcatgtttggcagtgattgccacatcatcaaattagtgacgtggcagt 102
Query: 238 gattaagtggggagagggacgaaattttaaatgattaaacaatgcagtggtgaattgtca 297
|||||||| || | |||| ||||||||||||||||| | |||| | | ||| ||
Sbjct: 101 gattaagttggtcaaaggactaaattttaaatgattaatgattgcaaggctagtttgcca 42
Query: 298 ggattagcgatta-cagggaccaatttttaaacgacccc 335
|||||||||| || ||||||||||||||||||| |||||
Sbjct: 41 ggattagcgaataccagggaccaatttttaaaccacccc 3
Score = 61.9 bits (31), Expect = 3e-10
Identities = 67/79 (84%)
Strand = Plus / Minus
Query: 2 aggggccgtttaaaaattggtccatgtattcgctaatccttgcaaactagtcttgcaatc 61
||||| ||||||||||||||||| |||| ||||||||||| |||| || | |||| |
Sbjct: 339 aggggtcgtttaaaaattggtccctgtaatcgctaatcctggcaatttacccctgcattg 280
Query: 62 attaatcatttaaaatttc 80
||||||||||||||||||
Sbjct: 279 tttaatcatttaaaatttc 261
>40780_mtr-MIR2585a:mirbase
Length = 346
Score = 167 bits (84), Expect = 7e-42
Identities = 102/108 (94%)
Strand = Plus / Plus
Query: 1 taggggccgtttaaaaattggtccatgtattcgctaatccttgcaaactagtcttgcaat 60
|||||| ||||||||||||||||| |||||||||||||| |||||||||| ||||||||
Sbjct: 4 taggggtcgtttaaaaattggtccctgtattcgctaatcattgcaaactaaccttgcaat 63
Query: 61 cattaatcatttaaaatttcatcatttgaccaacttaatcactgccac 108
|||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 64 cattaatcatttaaaatttcatcatttgaccaacttaatcaccgccac 111
Score = 167 bits (84), Expect = 7e-42
Identities = 102/108 (94%)
Strand = Plus / Plus
Query: 229 cgtggcagtgattaagtggggagagggacgaaattttaaatgattaaacaatgcagtggt 288
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct: 234 cgtggcagtgattaagtggggagagagacgaaattttaaatgattaaacaatgcaagggt 293
Query: 289 gaattgtcaggattagcgattacagggaccaatttttaaacgacccct 336
|||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 aaattaccaggattagcgattacagggaccaatttttaaacgacccct 341
Score = 143 bits (72), Expect = 1e-34
Identities = 94/100 (94%), Gaps = 1/100 (1%)
Strand = Plus / Plus
Query: 97 aatcactgccacacataaaattccaattctgcccttaagaagatgacaaaatattgaaga 156
|||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 134 aatcactgccacacatgaaattccaattttgcccttaagaagaggacaaaatattgaaga 193
Query: 157 aagaattggaaacctaggggtaaaattggaatttcatgtg 196
||||||||| |||| ||||||||||||||||||| |||||
Sbjct: 194 aagaattgg-aacccaggggtaaaattggaattttatgtg 232
Score = 93.7 bits (47), Expect = 8e-20
Identities = 131/159 (82%)
Strand = Plus / Minus
Query: 178 aaaattggaatttcatgtgtaacagtgattgacacgtcatcaaattcttgacgtggcagt 237
|||||||||||||||||||| ||||||||| |||||||||||| ||||||||| ||
Sbjct: 163 aaaattggaatttcatgtgtggcagtgattgcgacgtcatcaaataagtgacgtggcggt 104
Query: 238 gattaagtggggagagggacgaaattttaaatgattaaacaatgcagtggtgaattgtca 297
|||||||| || | || |||||||||||||||||| | |||| | | ||| |
Sbjct: 103 gattaagttggtcaaatgatgaaattttaaatgattaatgattgcaaggttagtttgcaa 44
Query: 298 ggattagcgattacagggaccaatttttaaacgacccct 336
||||||||| ||||||||||||||||||||||||||||
Sbjct: 43 tgattagcgaatacagggaccaatttttaaacgacccct 5
Score = 73.8 bits (37), Expect = 8e-14
Identities = 105/127 (82%), Gaps = 3/127 (2%)
Strand = Plus / Minus
Query: 1 taggggccgtttaaaaattggtccatgtattcgctaatccttgcaaactagtcttgcaat 60
|||||| ||||||||||||||||| |||| ||||||||||| | || || |||||| |
Sbjct: 342 taggggtcgtttaaaaattggtccctgtaatcgctaatcctggtaatttacccttgcatt 283
Query: 61 cattaatcatttaaaatttcatcatttgaccaacttaatcactgcca---cacataaaat 117
|||||||||||||||||| || | || ||||||||||||||| ||||||||||
Sbjct: 282 gtttaatcatttaaaatttcgtctctctccccacttaatcactgccacgccacataaaat 223
Query: 118 tccaatt 124
|||||||
Sbjct: 222 tccaatt 216
>40833_mtr-MIR2602a:mirbase
Length = 170
Score = 165 bits (83), Expect = 3e-41
Identities = 116/127 (91%)
Strand = Plus / Plus
Query: 97 aatcactgccacacataaaattccaattctgcccttaagaagatgacaaaatattgaaga 156
||||||| |||||||| ||||||||||| ||||||||||||| ||||||||||||||||
Sbjct: 31 aatcactaccacacatgaaattccaatttagcccttaagaagaggacaaaatattgaaga 90
Query: 157 aagaattggaaacctaggggtaaaattggaatttcatgtgtaacagtgattgacacgtca 216
|||||||||||||| |||||||||||| ||||||||||| | ||||||||| |||||||
Sbjct: 91 aagaattggaaacccaggggtaaaattagaatttcatgtatggcagtgattgccacgtca 150
Query: 217 tcaaatt 223
|||||||
Sbjct: 151 tcaaatt 157
Score = 54.0 bits (27), Expect = 7e-08
Identities = 51/59 (86%)
Strand = Plus / Minus
Query: 179 aaattggaatttcatgtgtaacagtgattgacacgtcatcaaattcttgacgtggcagt 237
||||||||||||||||||| |||||||| ||||||||| |||| ||| ||||||||
Sbjct: 59 aaattggaatttcatgtgtggtagtgattgccacgtcatcgaattagtgatgtggcagt 1
>40834_mtr-MIR2602b:mirbase
Length = 169
Score = 157 bits (79), Expect = 7e-39
Identities = 116/127 (91%), Gaps = 1/127 (0%)
Strand = Plus / Plus
Query: 97 aatcactgccacacataaaattccaattctgcccttaagaagatgacaaaatattgaaga 156
||||||| |||||||| ||||||||||| |||||||||||||| |||||| |||||||||
Sbjct: 31 aatcactaccacacatgaaattccaattttgcccttaagaagaggacaaa-tattgaaga 89
Query: 157 aagaattggaaacctaggggtaaaattggaatttcatgtgtaacagtgattgacacgtca 216
||||||||||||| |||||||||||||||||||||||| | ||||||||| |||||||
Sbjct: 90 aagaattggaaactcaggggtaaaattggaatttcatgtatggcagtgattgccacgtca 149
Query: 217 tcaaatt 223
|||||||
Sbjct: 150 tcaaatt 156
Score = 63.9 bits (32), Expect = 8e-11
Identities = 53/60 (88%)
Strand = Plus / Minus
Query: 178 aaaattggaatttcatgtgtaacagtgattgacacgtcatcaaattcttgacgtggcagt 237
|||||||||||||||||||| |||||||| ||||||||| |||| ||||||||||||
Sbjct: 60 aaaattggaatttcatgtgtggtagtgattgccacgtcatcgaattagtgacgtggcagt 1
>40784_mtr-MIR2585e:mirbase
Length = 368
Score = 125 bits (63), Expect = 2e-29
Identities = 93/103 (90%)
Strand = Plus / Plus
Query: 226 tgacgtggcagtgattaagtggggagagggacgaaattttaaatgattaaacaatgcagt 285
||||||| |||||||||||| || | ||||||||||||||||||||||||||||||
Sbjct: 258 tgacgtgacagtgattaagttggtcaaaggacgaaattttaaatgattaaacaatgcaag 317
Query: 286 ggtgaattgtcaggattagcgattacagggaccaatttttaaa 328
||| |||||||||||||||||||||||||||| ||||||||||
Sbjct: 318 ggtaaattgtcaggattagcgattacagggactaatttttaaa 360
Score = 77.8 bits (39), Expect = 5e-15
Identities = 81/95 (85%)
Strand = Plus / Minus
Query: 10 tttaaaaattggtccatgtattcgctaatccttgcaaactagtcttgcaatcattaatca 69
|||||||||| |||| |||| ||||||||||| ||| || |||||| | |||||||
Sbjct: 360 tttaaaaattagtccctgtaatcgctaatcctgacaatttacccttgcattgtttaatca 301
Query: 70 tttaaaatttcatcatttgaccaacttaatcactg 104
||||||||||| || ||||||||||||||||||||
Sbjct: 300 tttaaaatttcgtcctttgaccaacttaatcactg 266
Score = 69.9 bits (35), Expect = 1e-12
Identities = 65/75 (86%)
Strand = Plus / Minus
Query: 254 ggacgaaattttaaatgattaaacaatgcagtggtgaattgtcaggattagcgattacag 313
||||||||||||||||||||||| |||||| | |||| |||||||| |||||||||
Sbjct: 84 ggacgaaattttaaatgattaaataatgcaaggacaaattaccaggattaacgattacag 25
Query: 314 ggaccaatttttaaa 328
|||| ||||||||||
Sbjct: 24 ggactaatttttaaa 10
Score = 58.0 bits (29), Expect = 5e-09
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 63 ttaatcatttaaaatttcatcatttgaccaacttaatcact 103
|||||||||||||||||| || |||||| ||||||||||||
Sbjct: 63 ttaatcatttaaaatttcgtcctttgacaaacttaatcact 103
>40783_mtr-MIR2585d:mirbase
Length = 368
Score = 125 bits (63), Expect = 2e-29
Identities = 93/103 (90%)
Strand = Plus / Plus
Query: 226 tgacgtggcagtgattaagtggggagagggacgaaattttaaatgattaaacaatgcagt 285
||||||| |||||||||||| || | ||||||||||||||||||||||||||||||
Sbjct: 258 tgacgtgacagtgattaagttggtcaaaggacgaaattttaaatgattaaacaatgcaag 317
Query: 286 ggtgaattgtcaggattagcgattacagggaccaatttttaaa 328
||| |||||||||||||||||||||||||||| ||||||||||
Sbjct: 318 ggtaaattgtcaggattagcgattacagggactaatttttaaa 360
Score = 77.8 bits (39), Expect = 5e-15
Identities = 81/95 (85%)
Strand = Plus / Minus
Query: 10 tttaaaaattggtccatgtattcgctaatccttgcaaactagtcttgcaatcattaatca 69
|||||||||| |||| |||| ||||||||||| ||| || |||||| | |||||||
Sbjct: 360 tttaaaaattagtccctgtaatcgctaatcctgacaatttacccttgcattgtttaatca 301
Query: 70 tttaaaatttcatcatttgaccaacttaatcactg 104
||||||||||| || ||||||||||||||||||||
Sbjct: 300 tttaaaatttcgtcctttgaccaacttaatcactg 266
Score = 69.9 bits (35), Expect = 1e-12
Identities = 65/75 (86%)
Strand = Plus / Minus
Query: 254 ggacgaaattttaaatgattaaacaatgcagtggtgaattgtcaggattagcgattacag 313
||||||||||||||||||||||| |||||| | |||| |||||||| |||||||||
Sbjct: 84 ggacgaaattttaaatgattaaataatgcaaggacaaattaccaggattaacgattacag 25
Query: 314 ggaccaatttttaaa 328
|||| ||||||||||
Sbjct: 24 ggactaatttttaaa 10
Score = 58.0 bits (29), Expect = 5e-09
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 63 ttaatcatttaaaatttcatcatttgaccaacttaatcact 103
|||||||||||||||||| || |||||| ||||||||||||
Sbjct: 63 ttaatcatttaaaatttcgtcctttgacaaacttaatcact 103
>40985_mtr-MIR2668:mirbase
Length = 120
Score = 54.0 bits (27), Expect = 7e-08
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 290 aattgtcaggattagcgattacagggaccaatttttaaacgacccct 336
|||||||||||||| | | || | |||||||||||||||||||||||
Sbjct: 79 aattgtcaggattaacaaatataaggaccaatttttaaacgacccct 33
Score = 42.1 bits (21), Expect = 3e-04
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 1 taggggccgtttaaaaattggtccatgtattcgctaatcct 41
|||||| ||||||||||||||||| | |||| | |||||||
Sbjct: 32 taggggtcgtttaaaaattggtccttatatttgttaatcct 72
