miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>40780_mtr-MIR2585a:mirbase
Length = 346
Score = 456 bits (230), Expect = e-129
Identities = 314/338 (92%), Gaps = 3/338 (0%)
Strand = Plus / Plus
Query: 3 ggggtggtttaaaaattggtccctggtattcgctaatcctggcaaactagccttgcaatc 62
||||| ||||||||||||||||||| |||||||||||| | |||||||| ||||||||||
Sbjct: 6 ggggtcgtttaaaaattggtccctg-tattcgctaatcattgcaaactaaccttgcaatc 64
Query: 63 attaatcatttaaaatttagtcctttgaccaacttaatcactgccacgtcactaatttga 122
|||||||||||||||||| || |||||||||||||||||| ||||||||||| ||||||
Sbjct: 65 attaatcatttaaaatttcatcatttgaccaacttaatcaccgccacgtcacttatttga 124
Query: 123 tgatgtggcaatcactgccaaacatgaaattccaattttgcccttaagaagaggacaaaa 182
||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 125 tgacgtcgcaatcactgccacacatgaaattccaattttgcccttaagaagaggacaaaa 184
Query: 183 tattgaa-aaaggattggaaatcctggggtaaaattggaatttcatgtggcgtggcaatg 241
||||||| |||| ||||| || || |||||||||||||||||| ||||||||||||| ||
Sbjct: 185 tattgaagaaagaattgg-aacccaggggtaaaattggaattttatgtggcgtggcagtg 243
Query: 242 attaagtggggagatggacgaaattttaaatgattaaacaatgcaggggtaaattgccag 301
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 244 attaagtggggagagagacgaaattttaaatgattaaacaatgcaagggtaaattaccag 303
Query: 302 gattagcgattacagggaccaatttttaaacgacccct 339
||||||||||||||||||||||||||||||||||||||
Sbjct: 304 gattagcgattacagggaccaatttttaaacgacccct 341
Score = 77.8 bits (39), Expect = 5e-15
Identities = 69/79 (87%)
Strand = Plus / Minus
Query: 261 gaaattttaaatgattaaacaatgcaggggtaaattgccaggattagcgattacagggac 320
|||||||||||||||||| | |||| || || |||| | ||||||||| |||||||||
Sbjct: 83 gaaattttaaatgattaatgattgcaaggttagtttgcaatgattagcgaatacagggac 24
Query: 321 caatttttaaacgacccct 339
|||||||||||||||||||
Sbjct: 23 caatttttaaacgacccct 5
Score = 71.9 bits (36), Expect = 3e-13
Identities = 91/108 (84%), Gaps = 1/108 (0%)
Strand = Plus / Minus
Query: 3 ggggtggtttaaaaattggtccctggtattcgctaatcctggcaaactagccttgcaatc 62
||||| ||||||||||||||||||| || ||||||||||||| || || ||||||| |
Sbjct: 340 ggggtcgtttaaaaattggtccctg-taatcgctaatcctggtaatttacccttgcattg 282
Query: 63 attaatcatttaaaatttagtcctttgaccaacttaatcactgccacg 110
||||||||||||||||| ||| | || |||||||||||||||||
Sbjct: 281 tttaatcatttaaaatttcgtctctctccccacttaatcactgccacg 234
>40781_mtr-MIR2585b:mirbase
Length = 336
Score = 174 bits (88), Expect = 3e-44
Identities = 103/108 (95%)
Strand = Plus / Plus
Query: 232 cgtggcaatgattaagtggggagatggacgaaattttaaatgattaaacaatgcaggggt 291
||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct: 229 cgtggcagtgattaagtggggagagggacgaaattttaaatgattaaacaatgcagtggt 288
Query: 292 aaattgccaggattagcgattacagggaccaatttttaaacgacccct 339
||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 gaattgtcaggattagcgattacagggaccaatttttaaacgacccct 336
Score = 137 bits (69), Expect = 6e-33
Identities = 94/101 (93%), Gaps = 1/101 (0%)
Strand = Plus / Plus
Query: 9 gtttaaaaattggtccctggtattcgctaatcctggcaaactagccttgcaatcattaat 68
|||||||||||||||| || |||||||||||||| ||||||||| |||||||||||||||
Sbjct: 9 gtttaaaaattggtccatg-tattcgctaatccttgcaaactagtcttgcaatcattaat 67
Query: 69 catttaaaatttagtcctttgaccaacttaatcactgccac 109
|||||||||||| || ||||||||||||||||||||||||
Sbjct: 68 catttaaaatttcatcatttgaccaacttaatcactgccac 108
Score = 119 bits (60), Expect = 1e-27
Identities = 91/100 (91%), Gaps = 1/100 (1%)
Strand = Plus / Plus
Query: 132 aatcactgccaaacatgaaattccaattttgcccttaagaagaggacaaaatattgaa-a 190
||||||||||| |||| ||||||||||| |||||||||||||| |||||||||||||| |
Sbjct: 97 aatcactgccacacataaaattccaattctgcccttaagaagatgacaaaatattgaaga 156
Query: 191 aaggattggaaatcctggggtaaaattggaatttcatgtg 230
||| |||||||| | ||||||||||||||||||||||||
Sbjct: 157 aagaattggaaacctaggggtaaaattggaatttcatgtg 196
Score = 101 bits (51), Expect = 3e-22
Identities = 133/159 (83%), Gaps = 1/159 (0%)
Strand = Plus / Minus
Query: 3 ggggtggtttaaaaattggtccctggtattcgctaatcctggcaaactagccttgcaatc 62
||||| ||||||||||||||||||| || |||||||||||| ||| | | |||| |
Sbjct: 335 ggggtcgtttaaaaattggtccctg-taatcgctaatcctgacaattcaccactgcattg 277
Query: 63 attaatcatttaaaatttagtcctttgaccaacttaatcactgccacgtcactaatttga 122
||||||||||||||||| |||| | || |||||||||||||||||||| |||||||
Sbjct: 276 tttaatcatttaaaatttcgtccctctccccacttaatcactgccacgtcaagaatttga 217
Query: 123 tgatgtggcaatcactgccaaacatgaaattccaatttt 161
||| ||| ||||||||| | ||||||||||||||||||
Sbjct: 216 tgacgtgtcaatcactgttacacatgaaattccaatttt 178
Score = 61.9 bits (31), Expect = 3e-10
Identities = 67/79 (84%)
Strand = Plus / Minus
Query: 261 gaaattttaaatgattaaacaatgcaggggtaaattgccaggattagcgattacagggac 320
|||||||||||||||||| | |||| | || |||| ||||||||||| |||| ||||
Sbjct: 80 gaaattttaaatgattaatgattgcaagactagtttgcaaggattagcgaatacatggac 21
Query: 321 caatttttaaacgacccct 339
||||||||||||| |||||
Sbjct: 20 caatttttaaacggcccct 2
>40834_mtr-MIR2602b:mirbase
Length = 169
Score = 161 bits (81), Expect = 4e-40
Identities = 119/129 (92%), Gaps = 2/129 (1%)
Strand = Plus / Plus
Query: 102 actgccacgtcactaatttgatgatgtggcaatcactgccaaacatgaaattccaatttt 161
|||||||||||||||||| ||||| |||||||||||| ||| ||||||||||||||||||
Sbjct: 1 actgccacgtcactaattcgatgacgtggcaatcactaccacacatgaaattccaatttt 60
Query: 162 gcccttaagaagaggacaaaatattgaa-aaaggattggaaatcctggggtaaaattgga 220
||||||||||||||||| |||||||||| |||| |||||||| | ||||||||||||||
Sbjct: 61 gcccttaagaagaggac-aaatattgaagaaagaattggaaactcaggggtaaaattgga 119
Query: 221 atttcatgt 229
|||||||||
Sbjct: 120 atttcatgt 128
Score = 87.7 bits (44), Expect = 5e-18
Identities = 50/52 (96%)
Strand = Plus / Minus
Query: 110 gtcactaatttgatgatgtggcaatcactgccaaacatgaaattccaatttt 161
|||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct: 162 gtcactaatttgatgacgtggcaatcactgccatacatgaaattccaatttt 111
>40833_mtr-MIR2602a:mirbase
Length = 170
Score = 161 bits (81), Expect = 4e-40
Identities = 118/129 (91%), Gaps = 1/129 (0%)
Strand = Plus / Plus
Query: 102 actgccacgtcactaatttgatgatgtggcaatcactgccaaacatgaaattccaatttt 161
|||||||| ||||||||| ||||| |||||||||||| ||| |||||||||||||||||
Sbjct: 1 actgccacatcactaattcgatgacgtggcaatcactaccacacatgaaattccaattta 60
Query: 162 gcccttaagaagaggacaaaatattgaa-aaaggattggaaatcctggggtaaaattgga 220
|||||||||||||||||||||||||||| |||| |||||||| || ||||||||||| ||
Sbjct: 61 gcccttaagaagaggacaaaatattgaagaaagaattggaaacccaggggtaaaattaga 120
Query: 221 atttcatgt 229
|||||||||
Sbjct: 121 atttcatgt 129
Score = 79.8 bits (40), Expect = 1e-15
Identities = 49/52 (94%)
Strand = Plus / Minus
Query: 110 gtcactaatttgatgatgtggcaatcactgccaaacatgaaattccaatttt 161
|||||||||||||||| |||||||||||||||| ||||||||||| ||||||
Sbjct: 163 gtcactaatttgatgacgtggcaatcactgccatacatgaaattctaatttt 112
>40784_mtr-MIR2585e:mirbase
Length = 368
Score = 125 bits (63), Expect = 2e-29
Identities = 72/75 (96%)
Strand = Plus / Plus
Query: 257 ggacgaaattttaaatgattaaacaatgcaggggtaaattgccaggattagcgattacag 316
|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct: 286 ggacgaaattttaaatgattaaacaatgcaagggtaaattgtcaggattagcgattacag 345
Query: 317 ggaccaatttttaaa 331
|||| ||||||||||
Sbjct: 346 ggactaatttttaaa 360
Score = 103 bits (52), Expect = 9e-23
Identities = 92/104 (88%), Gaps = 1/104 (0%)
Strand = Plus / Minus
Query: 10 tttaaaaattggtccctggtattcgctaatcctggcaaactagccttgcaatcattaatc 69
|||||||||| ||||||| || |||||||||||| ||| || ||||||| | ||||||
Sbjct: 360 tttaaaaattagtccctg-taatcgctaatcctgacaatttacccttgcattgtttaatc 302
Query: 70 atttaaaatttagtcctttgaccaacttaatcactgccacgtca 113
||||||||||| |||||||||||||||||||||||| |||||||
Sbjct: 301 atttaaaatttcgtcctttgaccaacttaatcactgtcacgtca 258
Score = 93.7 bits (47), Expect = 8e-20
Identities = 68/75 (90%)
Strand = Plus / Minus
Query: 257 ggacgaaattttaaatgattaaacaatgcaggggtaaattgccaggattagcgattacag 316
||||||||||||||||||||||| |||||| || ||||| ||||||||| |||||||||
Sbjct: 84 ggacgaaattttaaatgattaaataatgcaaggacaaattaccaggattaacgattacag 25
Query: 317 ggaccaatttttaaa 331
|||| ||||||||||
Sbjct: 24 ggactaatttttaaa 10
Score = 71.9 bits (36), Expect = 3e-13
Identities = 88/104 (84%), Gaps = 1/104 (0%)
Strand = Plus / Plus
Query: 10 tttaaaaattggtccctggtattcgctaatcctggcaaactagccttgcaatcattaatc 69
|||||||||| ||||||| || ||| ||||||||| || | ||||||| | ||||||
Sbjct: 10 tttaaaaattagtccctg-taatcgttaatcctggtaatttgtccttgcattatttaatc 68
Query: 70 atttaaaatttagtcctttgaccaacttaatcactgccacgtca 113
||||||||||| |||||||||| |||||||||||| ||| ||||
Sbjct: 69 atttaaaatttcgtcctttgacaaacttaatcactcccaagtca 112
>40783_mtr-MIR2585d:mirbase
Length = 368
Score = 125 bits (63), Expect = 2e-29
Identities = 72/75 (96%)
Strand = Plus / Plus
Query: 257 ggacgaaattttaaatgattaaacaatgcaggggtaaattgccaggattagcgattacag 316
|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct: 286 ggacgaaattttaaatgattaaacaatgcaagggtaaattgtcaggattagcgattacag 345
Query: 317 ggaccaatttttaaa 331
|||| ||||||||||
Sbjct: 346 ggactaatttttaaa 360
Score = 103 bits (52), Expect = 9e-23
Identities = 92/104 (88%), Gaps = 1/104 (0%)
Strand = Plus / Minus
Query: 10 tttaaaaattggtccctggtattcgctaatcctggcaaactagccttgcaatcattaatc 69
|||||||||| ||||||| || |||||||||||| ||| || ||||||| | ||||||
Sbjct: 360 tttaaaaattagtccctg-taatcgctaatcctgacaatttacccttgcattgtttaatc 302
Query: 70 atttaaaatttagtcctttgaccaacttaatcactgccacgtca 113
||||||||||| |||||||||||||||||||||||| |||||||
Sbjct: 301 atttaaaatttcgtcctttgaccaacttaatcactgtcacgtca 258
Score = 93.7 bits (47), Expect = 8e-20
Identities = 68/75 (90%)
Strand = Plus / Minus
Query: 257 ggacgaaattttaaatgattaaacaatgcaggggtaaattgccaggattagcgattacag 316
||||||||||||||||||||||| |||||| || ||||| ||||||||| |||||||||
Sbjct: 84 ggacgaaattttaaatgattaaataatgcaaggacaaattaccaggattaacgattacag 25
Query: 317 ggaccaatttttaaa 331
|||| ||||||||||
Sbjct: 24 ggactaatttttaaa 10
Score = 71.9 bits (36), Expect = 3e-13
Identities = 88/104 (84%), Gaps = 1/104 (0%)
Strand = Plus / Plus
Query: 10 tttaaaaattggtccctggtattcgctaatcctggcaaactagccttgcaatcattaatc 69
|||||||||| ||||||| || ||| ||||||||| || | ||||||| | ||||||
Sbjct: 10 tttaaaaattagtccctg-taatcgttaatcctggtaatttgtccttgcattatttaatc 68
Query: 70 atttaaaatttagtcctttgaccaacttaatcactgccacgtca 113
||||||||||| |||||||||| |||||||||||| ||| ||||
Sbjct: 69 atttaaaatttcgtcctttgacaaacttaatcactcccaagtca 112
>40985_mtr-MIR2668:mirbase
Length = 120
Score = 60.0 bits (30), Expect = 1e-09
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 286 aggggtaaattgccaggattagcgattacagggaccaatttttaaacgacccct 339
|||||||||||| |||||||| | | || | |||||||||||||||||||||||
Sbjct: 86 aggggtaaattgtcaggattaacaaatataaggaccaatttttaaacgacccct 33
