miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>40800_mtr-MIR2590f:mirbase
Length = 197
Score = 331 bits (167), Expect = 1e-91
Identities = 187/197 (94%)
Strand = Plus / Plus
Query: 1 aaaattttaagaatgacatggcagaataatcacccttagattttatcaagaaatagtctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaaattttaagaatgacatggcagaataatcacccttagattttatcaagaaatagtctt 60
Query: 61 gaaattaatgttagccaataaaatctcagccgaaaatcatagggtggtgggtgttatgta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gaaattaatgttagccaataaaatctcagccgaaaatcatagggtggtgggtgttatgta 120
Query: 121 nnnnnnnnnnatgaaagattaataaatgagactgaaatctaaaggtgattattgtgccat 180
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ttttttttttatgaaagattaataaatgagactgaaatctaaaggtgattattgtgccat 180
Query: 181 gtcattcttgaatattt 197
|||||||||||||||||
Sbjct: 181 gtcattcttgaatattt 197
Score = 54.0 bits (27), Expect = 4e-08
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 155 aaatctaaaggtgattattgtgccatgtcattctt 189
|||||||| |||||||||| |||||||||||||||
Sbjct: 43 aaatctaagggtgattattctgccatgtcattctt 9
Score = 54.0 bits (27), Expect = 4e-08
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 9 aagaatgacatggcagaataatcacccttagattt 43
||||||||||||||| |||||||||| ||||||||
Sbjct: 189 aagaatgacatggcacaataatcacctttagattt 155
>40797_mtr-MIR2590c:mirbase
Length = 202
Score = 262 bits (132), Expect = 9e-71
Identities = 182/202 (90%), Gaps = 5/202 (2%)
Strand = Plus / Plus
Query: 1 aaaattttaagaatgacatggcagaataatcacccttagattttatcaagaaatagtctt 60
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct: 1 aaaattttaagaatgacatggcagaataatcacccttaaattttatcaataaatagtctt 60
Query: 61 gaaattaatgttagccaataaaatctc-----agccgaaaatcatagggtggtgggtgtt 115
||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||
Sbjct: 61 gaaattaatgttagccaataaaatctcagtctagccggaaatcatggggtggtgggtgtt 120
Query: 116 atgtannnnnnnnnnatgaaagattaataaatgagactgaaatctaaaggtgattattgt 175
||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atgtattttttatttatgaaagattaataaatgagactgaaatctaaaggtgattattgt 180
Query: 176 gccatgtcattcttgaatattt 197
||||| ||||||||||||||||
Sbjct: 181 gccatttcattcttgaatattt 202
Score = 46.1 bits (23), Expect = 1e-05
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 155 aaatctaaaggtgattattgtgccatgtcattctt 189
|||| ||| |||||||||| |||||||||||||||
Sbjct: 43 aaatttaagggtgattattctgccatgtcattctt 9
>40798_mtr-MIR2590d:mirbase
Length = 204
Score = 244 bits (123), Expect = 2e-65
Identities = 179/198 (90%), Gaps = 7/198 (3%)
Strand = Plus / Plus
Query: 1 aaaattttaagaatgacatggcagaataatcacccttagattttatcaagaaatagtctt 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 aaaatttcaagaatgacatggcagaataatcacccttagattttatcaagaaatagtctt 64
Query: 61 gaaattaatgttagccaataaaatctcagc-----cgaaaatcatagggtggtgggtgtt 115
|||| ||||||||||||||||||||||||| || ||||||| ||||||||||||||
Sbjct: 65 gaaactaatgttagccaataaaatctcagcctggtcggaaatcat-gggtggtgggtgtt 123
Query: 116 atgtannnnnnnnnnatgaaagattaataaatgagactgaaatctaaaggtgattattgt 175
||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 atgta-tttttttttatgaaagattaataaatgagactgaaatctaaaggtgattattgt 182
Query: 176 gccatgtcattcttgaat 193
||||||||||||||||||
Sbjct: 183 gccatgtcattcttgaat 200
Score = 60.0 bits (30), Expect = 7e-10
Identities = 36/38 (94%)
Strand = Plus / Minus
Query: 155 aaatctaaaggtgattattgtgccatgtcattcttgaa 192
|||||||| |||||||||| ||||||||||||||||||
Sbjct: 47 aaatctaagggtgattattctgccatgtcattcttgaa 10
Score = 54.0 bits (27), Expect = 4e-08
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 9 aagaatgacatggcagaataatcacccttagattt 43
||||||||||||||| |||||||||| ||||||||
Sbjct: 196 aagaatgacatggcacaataatcacctttagattt 162
>40799_mtr-MIR2590e:mirbase
Length = 209
Score = 228 bits (115), Expect = 1e-60
Identities = 179/202 (88%), Gaps = 10/202 (4%)
Strand = Plus / Plus
Query: 1 aaaattttaagaatgacatggcagaataatcacccttagattttatcaagaaatagtctt 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 5 aaaattttaagaatgacatggcagaataatcacccttagattttatcaagaaatagtcct 64
Query: 61 gaaattaatgttagccaataaaatctca-----gccgaaaatcatagggtggtgggtgtt 115
|||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||
Sbjct: 65 gaaattaatgttagccaataaaatctcagtctggccggaaatcat-gggtggtgggtgtt 123
Query: 116 atgta----nnnnnnnnnnatgaaagattaataaatgagactgaaatctaaaggtgatta 171
||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct: 124 atgtattttttttatttttatgaaagattaataaatgagattgaaatctaaaggtgatta 183
Query: 172 ttgtgccatgtcattcttgaat 193
||||||||||||||||||||||
Sbjct: 184 ttgtgccatgtcattcttgaat 205
Score = 54.0 bits (27), Expect = 4e-08
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 155 aaatctaaaggtgattattgtgccatgtcattctt 189
|||||||| |||||||||| |||||||||||||||
Sbjct: 47 aaatctaagggtgattattctgccatgtcattctt 13
Score = 54.0 bits (27), Expect = 4e-08
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 9 aagaatgacatggcagaataatcacccttagattt 43
||||||||||||||| |||||||||| ||||||||
Sbjct: 201 aagaatgacatggcacaataatcacctttagattt 167
>40796_mtr-MIR2590b:mirbase
Length = 203
Score = 228 bits (115), Expect = 1e-60
Identities = 176/198 (88%), Gaps = 6/198 (3%)
Strand = Plus / Plus
Query: 1 aaaattttaagaatgacatggcagaataatcacccttagattttatcaagaaatagtctt 60
||||||| |||||||||||||||||||||||||||||| |||||||||||||||| || |
Sbjct: 3 aaaatttcaagaatgacatggcagaataatcacccttaaattttatcaagaaatattcat 62
Query: 61 gaaattaatgttagccaataaaatctcagcc-----gaaaatcatagggtggtgggtgtt 115
||||||||||||| ||||||||||||||||| | ||||||| ||||||||||||||
Sbjct: 63 gaaattaatgttaaccaataaaatctcagcctgaccggaaatcatggggtggtgggtgtt 122
Query: 116 atgtannnnnnnnnnatgaaagattaataaatgagactgaaatctaaaggtgattattgt 175
||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 atgta-tctttttttatgaaagattaataaatgagactgaaatctaaaggtgattattgt 181
Query: 176 gccatgtcattcttgaat 193
||||||||||||||||||
Sbjct: 182 gccatgtcattcttgaat 199
Score = 54.0 bits (27), Expect = 4e-08
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 9 aagaatgacatggcagaataatcacccttagattt 43
||||||||||||||| |||||||||| ||||||||
Sbjct: 195 aagaatgacatggcacaataatcacctttagattt 161
Score = 52.0 bits (26), Expect = 2e-07
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 155 aaatctaaaggtgattattgtgccatgtcattcttgaa 192
|||| ||| |||||||||| ||||||||||||||||||
Sbjct: 45 aaatttaagggtgattattctgccatgtcattcttgaa 8
>40829_mtr-MIR2598:mirbase
Length = 336
Score = 107 bits (54), Expect = 3e-24
Identities = 57/58 (98%)
Strand = Plus / Minus
Query: 1 aaaattttaagaatgacatggcagaataatcacccttagattttatcaagaaatagtc 58
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59 aaaatttcaagaatgacatggcagaataatcacccttagattttatcaagaaatagtc 2
Score = 107 bits (54), Expect = 3e-24
Identities = 57/58 (98%)
Strand = Plus / Plus
Query: 1 aaaattttaagaatgacatggcagaataatcacccttagattttatcaagaaatagtc 58
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 aaaatttcaagaatgacatggcagaataatcacccttagattttatcaagaaatagtc 334
Score = 60.0 bits (30), Expect = 7e-10
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 155 aaatctaaaggtgattattgtgccatgtcattcttgaa 192
|||||||| |||||||||| ||||||||||||||||||
Sbjct: 17 aaatctaagggtgattattctgccatgtcattcttgaa 54
Score = 60.0 bits (30), Expect = 7e-10
Identities = 36/38 (94%)
Strand = Plus / Minus
Query: 155 aaatctaaaggtgattattgtgccatgtcattcttgaa 192
|||||||| |||||||||| ||||||||||||||||||
Sbjct: 319 aaatctaagggtgattattctgccatgtcattcttgaa 282
