miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>40798_mtr-MIR2590d:mirbase
Length = 204
Score = 274 bits (138), Expect = 2e-74
Identities = 183/199 (91%), Gaps = 1/199 (0%)
Strand = Plus / Plus
Query: 1 agaaaatttcaagaatgacatggcagaataatcacccttaaattttatcaagaaatattc 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct: 3 agaaaatttcaagaatgacatggcagaataatcacccttagattttatcaagaaatagtc 62
Query: 61 atgaaattaatgttaaccaataaaatctcagcctgaccggaaatcatggggtggtgggtg 120
||||| |||||||| ||||||||||||||||||| |||||||||| ||||||||||||
Sbjct: 63 ttgaaactaatgttagccaataaaatctcagcctggtcggaaatcat-gggtggtgggtg 121
Query: 121 ttatgtatcnnnnnnnatgaaagattaataaatgagactgaaatctaaaggtgattattg 180
|||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 ttatgtatttttttttatgaaagattaataaatgagactgaaatctaaaggtgattattg 181
Query: 181 tgccatgtcattcttgaat 199
|||||||||||||||||||
Sbjct: 182 tgccatgtcattcttgaat 200
Score = 61.9 bits (31), Expect = 2e-10
Identities = 40/43 (93%)
Strand = Plus / Minus
Query: 161 aaatctaaaggtgattattgtgccatgtcattcttgaattttt 203
|||||||| |||||||||| |||||||||||||||||| ||||
Sbjct: 47 aaatctaagggtgattattctgccatgtcattcttgaaatttt 5
Score = 52.0 bits (26), Expect = 2e-07
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 8 ttcaagaatgacatggcagaataatcacccttaaattt 45
|||||||||||||||||| |||||||||| ||| ||||
Sbjct: 199 ttcaagaatgacatggcacaataatcacctttagattt 162
>40797_mtr-MIR2590c:mirbase
Length = 202
Score = 256 bits (129), Expect = 6e-69
Identities = 180/198 (90%), Gaps = 1/198 (0%)
Strand = Plus / Plus
Query: 3 aaaatttcaagaatgacatggcagaataatcacccttaaattttatcaagaaatattcat 62
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| || |
Sbjct: 1 aaaattttaagaatgacatggcagaataatcacccttaaattttatcaataaatagtctt 60
Query: 63 gaaattaatgttaaccaataaaatctcagcctgaccggaaatcatggggtggtgggtgtt 122
||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 61 gaaattaatgttagccaataaaatctcagtctagccggaaatcatggggtggtgggtgtt 120
Query: 123 atgta-tcnnnnnnnatgaaagattaataaatgagactgaaatctaaaggtgattattgt 181
||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atgtattttttatttatgaaagattaataaatgagactgaaatctaaaggtgattattgt 180
Query: 182 gccatgtcattcttgaat 199
||||| ||||||||||||
Sbjct: 181 gccatttcattcttgaat 198
Score = 46.1 bits (23), Expect = 1e-05
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 161 aaatctaaaggtgattattgtgccatgtcattctt 195
|||| ||| |||||||||| |||||||||||||||
Sbjct: 43 aaatttaagggtgattattctgccatgtcattctt 9
Score = 44.1 bits (22), Expect = 4e-05
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 8 ttcaagaatgacatggcagaataatcacccttaaattt 45
||||||||||| |||||| |||||||||| ||| ||||
Sbjct: 197 ttcaagaatgaaatggcacaataatcacctttagattt 160
>40799_mtr-MIR2590e:mirbase
Length = 209
Score = 236 bits (119), Expect = 5e-63
Identities = 182/204 (89%), Gaps = 6/204 (2%)
Strand = Plus / Plus
Query: 1 agaaaatttcaagaatgacatggcagaataatcacccttaaattttatcaagaaatattc 60
||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct: 3 agaaaattttaagaatgacatggcagaataatcacccttagattttatcaagaaatagtc 62
Query: 61 atgaaattaatgttaaccaataaaatctcagcctgaccggaaatcatggggtggtgggtg 120
|||||||||||||| ||||||||||||||| ||| ||||||||||| ||||||||||||
Sbjct: 63 ctgaaattaatgttagccaataaaatctcagtctggccggaaatcat-gggtggtgggtg 121
Query: 121 ttatgta-----tcnnnnnnnatgaaagattaataaatgagactgaaatctaaaggtgat 175
||||||| | ||||||||||||||||||||| |||||||||||||||||
Sbjct: 122 ttatgtattttttttatttttatgaaagattaataaatgagattgaaatctaaaggtgat 181
Query: 176 tattgtgccatgtcattcttgaat 199
||||||||||||||||||||||||
Sbjct: 182 tattgtgccatgtcattcttgaat 205
Score = 54.0 bits (27), Expect = 4e-08
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 161 aaatctaaaggtgattattgtgccatgtcattctt 195
|||||||| |||||||||| |||||||||||||||
Sbjct: 47 aaatctaagggtgattattctgccatgtcattctt 13
Score = 52.0 bits (26), Expect = 2e-07
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 8 ttcaagaatgacatggcagaataatcacccttaaattt 45
|||||||||||||||||| |||||||||| ||| ||||
Sbjct: 204 ttcaagaatgacatggcacaataatcacctttagattt 167
>40800_mtr-MIR2590f:mirbase
Length = 197
Score = 232 bits (117), Expect = 8e-62
Identities = 177/198 (89%), Gaps = 6/198 (3%)
Strand = Plus / Plus
Query: 3 aaaatttcaagaatgacatggcagaataatcacccttaaattttatcaagaaatattcat 62
||||||| |||||||||||||||||||||||||||||| |||||||||||||||| || |
Sbjct: 1 aaaattttaagaatgacatggcagaataatcacccttagattttatcaagaaatagtctt 60
Query: 63 gaaattaatgttaaccaataaaatctcagcctgaccggaaatcatggggtggtgggtgtt 122
||||||||||||| ||||||||||||||||| | ||||||| ||||||||||||||
Sbjct: 61 gaaattaatgttagccaataaaatctcagcc-----gaaaatcatagggtggtgggtgtt 115
Query: 123 atgta-tcnnnnnnnatgaaagattaataaatgagactgaaatctaaaggtgattattgt 181
||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116 atgtattttttttttatgaaagattaataaatgagactgaaatctaaaggtgattattgt 175
Query: 182 gccatgtcattcttgaat 199
||||||||||||||||||
Sbjct: 176 gccatgtcattcttgaat 193
Score = 54.0 bits (27), Expect = 4e-08
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 161 aaatctaaaggtgattattgtgccatgtcattctt 195
|||||||| |||||||||| |||||||||||||||
Sbjct: 43 aaatctaagggtgattattctgccatgtcattctt 9
Score = 52.0 bits (26), Expect = 2e-07
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 8 ttcaagaatgacatggcagaataatcacccttaaattt 45
|||||||||||||||||| |||||||||| ||| ||||
Sbjct: 192 ttcaagaatgacatggcacaataatcacctttagattt 155
>40795_mtr-MIR2590a:mirbase
Length = 197
Score = 232 bits (117), Expect = 8e-62
Identities = 177/198 (89%), Gaps = 6/198 (3%)
Strand = Plus / Plus
Query: 3 aaaatttcaagaatgacatggcagaataatcacccttaaattttatcaagaaatattcat 62
||||||| |||||||||||||||||||||||||||||| |||||||||||||||| || |
Sbjct: 1 aaaattttaagaatgacatggcagaataatcacccttagattttatcaagaaatagtctt 60
Query: 63 gaaattaatgttaaccaataaaatctcagcctgaccggaaatcatggggtggtgggtgtt 122
||||||||||||| ||||||||||||||||| | ||||||| ||||||||||||||
Sbjct: 61 gaaattaatgttagccaataaaatctcagcc-----gaaaatcatagggtggtgggtgtt 115
Query: 123 atgta-tcnnnnnnnatgaaagattaataaatgagactgaaatctaaaggtgattattgt 181
||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116 atgtattttttttttatgaaagattaataaatgagactgaaatctaaaggtgattattgt 175
Query: 182 gccatgtcattcttgaat 199
||||||||||||||||||
Sbjct: 176 gccatgtcattcttgaat 193
Score = 54.0 bits (27), Expect = 4e-08
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 161 aaatctaaaggtgattattgtgccatgtcattctt 195
|||||||| |||||||||| |||||||||||||||
Sbjct: 43 aaatctaagggtgattattctgccatgtcattctt 9
Score = 52.0 bits (26), Expect = 2e-07
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 8 ttcaagaatgacatggcagaataatcacccttaaattt 45
|||||||||||||||||| |||||||||| ||| ||||
Sbjct: 192 ttcaagaatgacatggcacaataatcacctttagattt 155
>40829_mtr-MIR2598:mirbase
Length = 336
Score = 101 bits (51), Expect = 2e-22
Identities = 54/55 (98%)
Strand = Plus / Minus
Query: 3 aaaatttcaagaatgacatggcagaataatcacccttaaattttatcaagaaata 57
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 59 aaaatttcaagaatgacatggcagaataatcacccttagattttatcaagaaata 5
Score = 101 bits (51), Expect = 2e-22
Identities = 54/55 (98%)
Strand = Plus / Plus
Query: 3 aaaatttcaagaatgacatggcagaataatcacccttaaattttatcaagaaata 57
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 277 aaaatttcaagaatgacatggcagaataatcacccttagattttatcaagaaata 331
Score = 61.9 bits (31), Expect = 2e-10
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 161 aaatctaaaggtgattattgtgccatgtcattcttgaattttt 203
|||||||| |||||||||| |||||||||||||||||| ||||
Sbjct: 17 aaatctaagggtgattattctgccatgtcattcttgaaatttt 59
Score = 61.9 bits (31), Expect = 2e-10
Identities = 40/43 (93%)
Strand = Plus / Minus
Query: 161 aaatctaaaggtgattattgtgccatgtcattcttgaattttt 203
|||||||| |||||||||| |||||||||||||||||| ||||
Sbjct: 319 aaatctaagggtgattattctgccatgtcattcttgaaatttt 277
