miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: BLAST

BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>40879_mtr-MIR2629g:mirbase
          Length = 274

 Score = 65.9 bits (33), Expect = 4e-12
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                            
Query: 44  taactgccgaagttttcctcggtagttaactgc 76
           |||||||||||||||||||||||||||||||||
Sbjct: 226 taactgccgaagttttcctcggtagttaactgc 258

>40876_mtr-MIR2629d:mirbase
          Length = 95

 Score = 65.9 bits (33), Expect = 4e-12
 Identities = 36/37 (97%)
 Strand = Plus / Plus

                                               
Query: 38 gatagttaactgccgaagttttcctcggtagttaact 74
          ||||||| |||||||||||||||||||||||||||||
Sbjct: 4  gatagtttactgccgaagttttcctcggtagttaact 40

>40877_mtr-MIR2629e:mirbase
          Length = 109

 Score = 56.0 bits (28), Expect = 4e-09
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                              
Query: 41 agttaactgccgaagttttcctcggtagttaactgc 76
          |||||| ||| |||||||||||||||||||||||||
Sbjct: 8  agttaattgcggaagttttcctcggtagttaactgc 43

>40873_mtr-MIR2629a:mirbase
          Length = 59

 Score = 56.0 bits (28), Expect = 4e-09
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                          
Query: 54 agttttcctcggtagttaactgccgctggttc 85
          ||||||||||||||||||||||| ||||||||
Sbjct: 2  agttttcctcggtagttaactgcagctggttc 33

>40875_mtr-MIR2629c:mirbase
          Length = 61

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 53 aagttttcctcggtagttaactgc 76
          ||||||||||||||||||||||||
Sbjct: 1  aagttttcctcggtagttaactgc 24

>40874_mtr-MIR2629b:mirbase
          Length = 61

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 53 aagttttcctcggtagttaactgc 76
          ||||||||||||||||||||||||
Sbjct: 1  aagttttcctcggtagttaactgc 24