miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>40906_mtr-MIR2632a:mirbase
Length = 187
Score = 153 bits (77), Expect = 6e-38
Identities = 77/77 (100%)
Strand = Plus / Plus
Query: 3 gtcatttgaattttcatccctgaagttactaatccttccaatctgcccctgcaaatatta 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 gtcatttgaattttcatccctgaagttactaatccttccaatctgcccctgcaaatatta 62
Query: 63 atcatttgacttttggt 79
|||||||||||||||||
Sbjct: 63 atcatttgacttttggt 79
Score = 125 bits (63), Expect = 1e-29
Identities = 72/75 (96%)
Strand = Plus / Minus
Query: 5 catttgaattttcatccctgaagttactaatccttccaatctgcccctgcaaatattaat 64
||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 182 catttgaattttcgtcgctgaagttactaatccttccaatctgcccttgcaaatattaat 123
Query: 65 catttgacttttggt 79
|||||||||||||||
Sbjct: 122 catttgacttttggt 108
Score = 111 bits (56), Expect = 2e-25
Identities = 78/84 (92%), Gaps = 1/84 (1%)
Strand = Plus / Minus
Query: 108 taattatgaccaaaagttaaatgattaatatttgcaggg-cagattagaaggattagtaa 166
|||||| |||||||||| ||||||||||||||||||||| |||||| |||||||||||||
Sbjct: 87 taattaggaccaaaagtcaaatgattaatatttgcaggggcagattggaaggattagtaa 28
Query: 167 cttcagagacgaaaattcaaatga 190
|||||| || ||||||||||||||
Sbjct: 27 cttcagggatgaaaattcaaatga 4
Score = 111 bits (56), Expect = 2e-25
Identities = 72/76 (94%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 115 gaccaaaagttaaatgattaatatttgca-gggcagattagaaggattagtaacttcaga 173
|||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct: 107 gaccaaaagtcaaatgattaatatttgcaagggcagattggaaggattagtaacttcagc 166
Query: 174 gacgaaaattcaaatg 189
||||||||||||||||
Sbjct: 167 gacgaaaattcaaatg 182
>40908_mtr-MIR2632c:mirbase
Length = 322
Score = 129 bits (65), Expect = 9e-31
Identities = 71/73 (97%)
Strand = Plus / Plus
Query: 5 catttgaattttcatccctgaagttactaatccttccaatctgcccctgcaaatattaat 64
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 5 catttgaattttcgtccctgaagttactaatccttccaatatgcccctgcaaatattaat 64
Query: 65 catttgacttttg 77
|||||||||||||
Sbjct: 65 catttgacttttg 77
Score = 109 bits (55), Expect = 8e-25
Identities = 77/83 (92%), Gaps = 1/83 (1%)
Strand = Plus / Minus
Query: 108 taattatgaccaaaagttaaatgattaatatttgcaggg-cagattagaaggattagtaa 166
||||||||| ||||||| ||||||||||||||||||||| || ||| |||||||||||||
Sbjct: 87 taattatgatcaaaagtcaaatgattaatatttgcaggggcatattggaaggattagtaa 28
Query: 167 cttcagagacgaaaattcaaatg 189
|||||| ||||||||||||||||
Sbjct: 27 cttcagggacgaaaattcaaatg 5
Score = 109 bits (55), Expect = 8e-25
Identities = 70/75 (93%)
Strand = Plus / Minus
Query: 3 gtcatttgaattttcatccctgaagttactaatccttccaatctgcccctgcaaatatta 62
|||||||||||||| ||||||||||||||||||||| ||||||||||| | ||||||||
Sbjct: 319 gtcatttgaattttagtccctgaagttactaatcctttcaatctgcccccgtaaatatta 260
Query: 63 atcatttgacttttg 77
|||||||||||||||
Sbjct: 259 atcatttgacttttg 245
Score = 83.8 bits (42), Expect = 5e-17
Identities = 76/86 (88%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 106 cctaattatgaccaaaagttaaatgattaatatttgcaggg-cagattagaaggattagt 164
|||||||| || ||||||| ||||||||||||||| | ||| |||||| ||||||||||
Sbjct: 233 cctaattaggagcaaaagtcaaatgattaatatttacgggggcagattgaaaggattagt 292
Query: 165 aacttcagagacgaaaattcaaatga 190
|||||||| ||| |||||||||||||
Sbjct: 293 aacttcagggactaaaattcaaatga 318
Score = 52.0 bits (26), Expect = 2e-07
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 3 gtcatttgaattttcatccctgaagttactaatc 36
|||| ||||||||||||| |||||||||||||||
Sbjct: 126 gtcacttgaattttcatcactgaagttactaatc 93
Score = 42.1 bits (21), Expect = 2e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 158 gattagtaacttcagagacgaaaattcaa 186
||||||||||||||| || ||||||||||
Sbjct: 93 gattagtaacttcagtgatgaaaattcaa 121
>40914_mtr-MIR2638a:mirbase
Length = 269
Score = 89.7 bits (45), Expect = 7e-19
Identities = 51/53 (96%)
Strand = Plus / Plus
Query: 27 gttactaatccttccaatctgcccctgcaaatattaatcatttgacttttggt 79
|||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1 gttactaatcattccaatctgccactgcaaatattaatcatttgacttttggt 53
Score = 79.8 bits (40), Expect = 7e-16
Identities = 43/44 (97%)
Strand = Plus / Minus
Query: 28 ttactaatccttccaatctgcccctgcaaatattaatcatttga 71
|||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 269 ttactaatccttccaatctgccactgcaaatattaatcatttga 226
Score = 75.8 bits (38), Expect = 1e-14
Identities = 57/62 (91%), Gaps = 1/62 (1%)
Strand = Plus / Minus
Query: 107 ctaattatgaccaaaagttaaatgattaatatttgcag-ggcagattagaaggattagta 165
||||||| |||||||||| ||||||||||||||||||| |||||||| ||| ||||||||
Sbjct: 62 ctaattaggaccaaaagtcaaatgattaatatttgcagtggcagattggaatgattagta 3
Query: 166 ac 167
||
Sbjct: 2 ac 1
Score = 60.0 bits (30), Expect = 7e-10
Identities = 40/42 (95%), Gaps = 1/42 (2%)
Strand = Plus / Plus
Query: 126 aaatgattaatatttgcag-ggcagattagaaggattagtaa 166
||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 228 aaatgattaatatttgcagtggcagattggaaggattagtaa 269
Score = 58.0 bits (29), Expect = 3e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 4 tcatttgaattttcatccctgaagttactaatc 36
|||||||||||||||||||| ||||||||||||
Sbjct: 172 tcatttgaattttcatccctaaagttactaatc 204
Score = 42.1 bits (21), Expect = 2e-04
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 158 gattagtaacttcagagacgaaaattcaaatga 190
|||||||||||| || || ||||||||||||||
Sbjct: 204 gattagtaactttagggatgaaaattcaaatga 172
>40915_mtr-MIR2638b:mirbase
Length = 269
Score = 87.7 bits (44), Expect = 3e-18
Identities = 50/52 (96%)
Strand = Plus / Minus
Query: 28 ttactaatccttccaatctgcccctgcaaatattaatcatttgacttttggt 79
||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct: 269 ttactaatcattccaatctgccactgcaaatattaatcatttgacttttggt 218
Score = 81.8 bits (41), Expect = 2e-16
Identities = 44/45 (97%)
Strand = Plus / Plus
Query: 27 gttactaatccttccaatctgcccctgcaaatattaatcatttga 71
||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1 gttactaatccttccaatctgccactgcaaatattaatcatttga 45
Score = 73.8 bits (37), Expect = 4e-14
Identities = 56/61 (91%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 107 ctaattatgaccaaaagttaaatgattaatatttgcag-ggcagattagaaggattagta 165
||||||| |||||||||| ||||||||||||||||||| |||||||| ||| ||||||||
Sbjct: 209 ctaattaggaccaaaagtcaaatgattaatatttgcagtggcagattggaatgattagta 268
Query: 166 a 166
|
Sbjct: 269 a 269
Score = 61.9 bits (31), Expect = 2e-10
Identities = 41/43 (95%), Gaps = 1/43 (2%)
Strand = Plus / Minus
Query: 126 aaatgattaatatttgcag-ggcagattagaaggattagtaac 167
||||||||||||||||||| |||||||| ||||||||||||||
Sbjct: 43 aaatgattaatatttgcagtggcagattggaaggattagtaac 1
Score = 58.0 bits (29), Expect = 3e-09
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 4 tcatttgaattttcatccctgaagttactaatc 36
|||||||||||||||||||| ||||||||||||
Sbjct: 99 tcatttgaattttcatccctaaagttactaatc 67
Score = 42.1 bits (21), Expect = 2e-04
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 158 gattagtaacttcagagacgaaaattcaaatga 190
|||||||||||| || || ||||||||||||||
Sbjct: 67 gattagtaactttagggatgaaaattcaaatga 99
