miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>40915_mtr-MIR2638b:mirbase
Length = 269
Score = 222 bits (112), Expect = 1e-58
Identities = 229/269 (85%), Gaps = 1/269 (0%)
Strand = Plus / Plus
Query: 27 gttactaatccttccaatatgcccctgcaaatattaatcatttgacttttgatcataatt 86
|||||||||||||||||| |||| ||||||||||||||||||||| | || |||||
Sbjct: 1 gttactaatccttccaatctgccactgcaaatattaatcatttgaaaaatagtcctaatt 60
Query: 87 acatctgattagtaacttcagtgatgaaaattcaagtgacctatatttggagggatgaaa 146
|||||||||||||||||| || ||||||||||||| ||| |||||||| ||||| |||
Sbjct: 61 acatctgattagtaactttagggatgaaaattcaaatgatatatatttgcagggacaaaa 120
Query: 147 gacctatttaagcaaaccacctagcccaatcatcacttgccacatgggcaccacgtcgct 206
||||||||||||| |||||||| | |||||||||||||||||||| ||||||||||||||
Sbjct: 121 gacctatttaagccaaccacctcgtccaatcatcacttgccacataggcaccacgtcgct 180
Query: 207 aatgacaacccacctca-ccnnnnnnncctaattaggagcaaaagtcaaatgattaatat 265
||||| | |||| |||| | |||||||||| |||||||||||||||||||||
Sbjct: 181 aatgatagcccatctcagcaaaaaaaaactaattaggaccaaaagtcaaatgattaatat 240
Query: 266 ttacgggggcagattgaaaggattagtaa 294
|| | | ||||||||| || |||||||||
Sbjct: 241 ttgcagtggcagattggaatgattagtaa 269
Score = 79.8 bits (40), Expect = 1e-15
Identities = 55/60 (91%)
Strand = Plus / Minus
Query: 28 ttactaatccttccaatatgcccctgcaaatattaatcatttgacttttgatcataatta 87
||||||||| ||||||| |||| ||||||||||||||||||||||||||| || ||||||
Sbjct: 269 ttactaatcattccaatctgccactgcaaatattaatcatttgacttttggtcctaatta 210
Score = 58.0 bits (29), Expect = 4e-09
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 251 tcaaatgattaatatttacgggggcagattgaaaggattagtaac 295
||||||||||||||||| | | ||||||||| |||||||||||||
Sbjct: 45 tcaaatgattaatatttgcagtggcagattggaaggattagtaac 1
Score = 48.1 bits (24), Expect = 4e-06
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 5 catttgaattttcgtccctgaagttactaatc 36
||||||||||||| ||||| ||||||||||||
Sbjct: 98 catttgaattttcatccctaaagttactaatc 67
Score = 42.1 bits (21), Expect = 3e-04
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 286 gattagtaacttcagggactaaaattcaaatga 318
|||||||||||| ||||| |||||||||||||
Sbjct: 67 gattagtaactttagggatgaaaattcaaatga 99
>40914_mtr-MIR2638a:mirbase
Length = 269
Score = 222 bits (112), Expect = 1e-58
Identities = 229/269 (85%), Gaps = 1/269 (0%)
Strand = Plus / Minus
Query: 28 ttactaatccttccaatatgcccctgcaaatattaatcatttgacttttgatcataatta 87
||||||||||||||||| |||| ||||||||||||||||||||| | || ||||||
Sbjct: 269 ttactaatccttccaatctgccactgcaaatattaatcatttgaaaaatagtcctaatta 210
Query: 88 catctgattagtaacttcagtgatgaaaattcaagtgacctatatttggagggatgaaag 147
||||||||||||||||| || ||||||||||||| ||| |||||||| ||||| ||||
Sbjct: 209 catctgattagtaactttagggatgaaaattcaaatgatatatatttgcagggacaaaag 150
Query: 148 acctatttaagcaaaccacctagcccaatcatcacttgccacatgggcaccacgtcgcta 207
|||||||||||| |||||||| | |||||||||||||||||||| |||||||||||||||
Sbjct: 149 acctatttaagccaaccacctcgtccaatcatcacttgccacataggcaccacgtcgcta 90
Query: 208 atgacaacccacctca-ccnnnnnnncctaattaggagcaaaagtcaaatgattaatatt 266
|||| | |||| |||| | |||||||||| ||||||||||||||||||||||
Sbjct: 89 atgatagcccatctcagcaaaaaaaaactaattaggaccaaaagtcaaatgattaatatt 30
Query: 267 tacgggggcagattgaaaggattagtaac 295
| | | ||||||||| || ||||||||||
Sbjct: 29 tgcagtggcagattggaatgattagtaac 1
Score = 81.8 bits (41), Expect = 3e-16
Identities = 56/61 (91%)
Strand = Plus / Plus
Query: 27 gttactaatccttccaatatgcccctgcaaatattaatcatttgacttttgatcataatt 86
|||||||||| ||||||| |||| ||||||||||||||||||||||||||| || |||||
Sbjct: 1 gttactaatcattccaatctgccactgcaaatattaatcatttgacttttggtcctaatt 60
Query: 87 a 87
|
Sbjct: 61 a 61
Score = 56.0 bits (28), Expect = 2e-08
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 251 tcaaatgattaatatttacgggggcagattgaaaggattagtaa 294
||||||||||||||||| | | ||||||||| ||||||||||||
Sbjct: 226 tcaaatgattaatatttgcagtggcagattggaaggattagtaa 269
Score = 48.1 bits (24), Expect = 4e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 5 catttgaattttcgtccctgaagttactaatc 36
||||||||||||| ||||| ||||||||||||
Sbjct: 173 catttgaattttcatccctaaagttactaatc 204
Score = 42.1 bits (21), Expect = 3e-04
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 286 gattagtaacttcagggactaaaattcaaatga 318
|||||||||||| ||||| |||||||||||||
Sbjct: 204 gattagtaactttagggatgaaaattcaaatga 172
>40906_mtr-MIR2632a:mirbase
Length = 187
Score = 167 bits (84), Expect = 7e-42
Identities = 96/100 (96%)
Strand = Plus / Plus
Query: 5 catttgaattttcgtccctgaagttactaatccttccaatatgcccctgcaaatattaat 64
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 5 catttgaattttcatccctgaagttactaatccttccaatctgcccctgcaaatattaat 64
Query: 65 catttgacttttgatcataattacatctgattagtaactt 104
||||||||||||| || |||||||||||||||||||||||
Sbjct: 65 catttgacttttggtcctaattacatctgattagtaactt 104
Score = 125 bits (63), Expect = 2e-29
Identities = 81/87 (93%)
Strand = Plus / Minus
Query: 235 taattaggagcaaaagtcaaatgattaatatttacgggggcagattgaaaggattagtaa 294
||||||||| ||||||||||||||||||||||| | ||||||||||| ||||||||||||
Sbjct: 87 taattaggaccaaaagtcaaatgattaatatttgcaggggcagattggaaggattagtaa 28
Query: 295 cttcagggactaaaattcaaatgacct 321
||||||||| ||||||||||||||||
Sbjct: 27 cttcagggatgaaaattcaaatgacct 1
Score = 123 bits (62), Expect = 9e-29
Identities = 71/74 (95%)
Strand = Plus / Minus
Query: 4 ccatttgaattttcgtccctgaagttactaatccttccaatatgcccctgcaaatattaa 63
||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 183 ccatttgaattttcgtcgctgaagttactaatccttccaatctgcccttgcaaatattaa 124
Query: 64 tcatttgacttttg 77
||||||||||||||
Sbjct: 123 tcatttgacttttg 110
Score = 105 bits (53), Expect = 2e-23
Identities = 77/85 (90%)
Strand = Plus / Plus
Query: 238 ttaggagcaaaagtcaaatgattaatatttacgggggcagattgaaaggattagtaactt 297
|||||| ||||||||||||||||||||||| | |||||||||| |||||||||||||||
Sbjct: 103 ttaggaccaaaagtcaaatgattaatatttgcaagggcagattggaaggattagtaactt 162
Query: 298 cagggactaaaattcaaatgaccta 322
||| ||| |||||||||||| ||||
Sbjct: 163 cagcgacgaaaattcaaatggccta 187
Score = 56.0 bits (28), Expect = 2e-08
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 93 gattagtaacttcagtgatgaaaattcaagtgacct 128
||||||||||||||| ||||||||||||| ||||||
Sbjct: 36 gattagtaacttcagggatgaaaattcaaatgacct 1
Score = 42.1 bits (21), Expect = 3e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 93 gattagtaacttcagtgatgaaaattcaa 121
||||||||||||||| || ||||||||||
Sbjct: 151 gattagtaacttcagcgacgaaaattcaa 179
>40907_mtr-MIR2632b:mirbase
Length = 194
Score = 129 bits (65), Expect = 1e-30
Identities = 71/73 (97%)
Strand = Plus / Plus
Query: 5 catttgaattttcgtccctgaagttactaatccttccaatatgcccctgcaaatattaat 64
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 5 catttgaattttcatccctgaagttactaatccttccaatctgcccctgcaaatattaat 64
Query: 65 catttgacttttg 77
|||||||||||||
Sbjct: 65 catttgacttttg 77
Score = 109 bits (55), Expect = 1e-24
Identities = 70/75 (93%)
Strand = Plus / Minus
Query: 245 caaaagtcaaatgattaatatttacgggggcagattgaaaggattagtaacttcagggac 304
||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||||
Sbjct: 77 caaaagtcaaatgattaatatttgcaggggcagattggaaggattagtaacttcagggat 18
Query: 305 taaaattcaaatgac 319
||||||||||||||
Sbjct: 17 gaaaattcaaatgac 3
Score = 109 bits (55), Expect = 1e-24
Identities = 77/83 (92%), Gaps = 1/83 (1%)
Strand = Plus / Minus
Query: 5 catttgaattttcgtccctgaagttactaatccttccaatatgcccctgcaaatattaat 64
|||||||||||||||| ||||||||||||||||||| ||| || ||||||||||||||||
Sbjct: 189 catttgaattttcgtctctgaagttactaatccttctaatctg-ccctgcaaatattaat 131
Query: 65 catttgacttttgatcataatta 87
||||| ||||||| |||||||||
Sbjct: 130 catttaacttttggtcataatta 108
Score = 83.8 bits (42), Expect = 8e-17
Identities = 76/86 (88%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 233 cctaattaggagcaaaagtcaaatgattaatatttacgggggcagattgaaaggattagt 292
|||||||| || ||||||| ||||||||||||||| | ||| |||||| ||||||||||
Sbjct: 106 cctaattatgaccaaaagttaaatgattaatatttgcaggg-cagattagaaggattagt 164
Query: 293 aacttcagggactaaaattcaaatga 318
|||||||| ||| |||||||||||||
Sbjct: 165 aacttcagagacgaaaattcaaatga 190
Score = 52.0 bits (26), Expect = 3e-07
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 93 gattagtaacttcagtgatgaaaattcaagtgac 126
||||||||||||||| ||||||||||||| ||||
Sbjct: 36 gattagtaacttcagggatgaaaattcaaatgac 3
Score = 42.1 bits (21), Expect = 3e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 93 gattagtaacttcagtgatgaaaattcaa 121
||||||||||||||| || ||||||||||
Sbjct: 158 gattagtaacttcagagacgaaaattcaa 186
