miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>40915_mtr-MIR2638b:mirbase
Length = 269
Score = 478 bits (241), Expect = e-135
Identities = 259/268 (96%)
Strand = Plus / Minus
Query: 2 ttactaatcattccaatctgccactgcaaatattaatcatttgacttttggtcctaatta 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 ttactaatcattccaatctgccactgcaaatattaatcatttgacttttggtcctaatta 210
Query: 62 gnnnnnnnnngctgagatgggctatcattagcgacgtggtgcctatgtggcaagtgatga 121
| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 gtttttttttgctgagatgggctatcattagcgacgtggtgcctatgtggcaagtgatga 150
Query: 122 ttggacgaggtggttggcttaaataggtcttttgtccctgcaaatatatatcatttgaat 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 ttggacgaggtggttggcttaaataggtcttttgtccctgcaaatatatatcatttgaat 90
Query: 182 tttcatccctaaagttactaatcagatgtaattaggactatttttcaaatgattaatatt 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89 tttcatccctaaagttactaatcagatgtaattaggactatttttcaaatgattaatatt 30
Query: 242 tgcagtggcagattggaaggattagtaa 269
||||||||||||||||||||||||||||
Sbjct: 29 tgcagtggcagattggaaggattagtaa 2
Score = 81.8 bits (41), Expect = 3e-16
Identities = 44/45 (97%)
Strand = Plus / Plus
Query: 1 gttactaatcattccaatctgccactgcaaatattaatcatttga 45
|||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1 gttactaatccttccaatctgccactgcaaatattaatcatttga 45
Score = 79.8 bits (40), Expect = 1e-15
Identities = 43/44 (97%)
Strand = Plus / Plus
Query: 226 tcaaatgattaatatttgcagtggcagattggaaggattagtaa 269
|||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 226 tcaaatgattaatatttgcagtggcagattggaatgattagtaa 269
>40908_mtr-MIR2632c:mirbase
Length = 322
Score = 226 bits (114), Expect = 7e-60
Identities = 229/269 (85%), Gaps = 1/269 (0%)
Strand = Plus / Minus
Query: 1 gttactaatcattccaatctgccactgcaaatattaatcatttgacttttggtcctaatt 60
|||||||||| || ||||||||| | | ||||||||||||||||||||||| ||||||||
Sbjct: 295 gttactaatcctttcaatctgcccccgtaaatattaatcatttgacttttgctcctaatt 236
Query: 61 agnnnnnnnnngctgagatgggctatcattagcgacgtggtgcctatgtggcaagtgatg 120
|| | |||| |||| | ||||||||||||||||||| |||||||||||||||
Sbjct: 235 aggtttttttgg-tgaggtgggttgtcattagcgacgtggtgcccatgtggcaagtgatg 177
Query: 121 attggacgaggtggttggcttaaataggtcttttgtccctgcaaatatatatcatttgaa 180
||||| | |||||||| |||||||||||||||| ||||| |||||||| ||| |||||
Sbjct: 176 attgggctaggtggtttgcttaaataggtctttcatccctccaaatataggtcacttgaa 117
Query: 181 ttttcatccctaaagttactaatcagatgtaattaggactatttttcaaatgattaatat 240
|||||||| || ||||||||||||||||||||||| || | |||||||||||||||
Sbjct: 116 ttttcatcactgaagttactaatcagatgtaattatgatcaaaagtcaaatgattaatat 57
Query: 241 ttgcagtggcagattggaaggattagtaa 269
|||||| |||| |||||||||||||||||
Sbjct: 56 ttgcaggggcatattggaaggattagtaa 28
Score = 81.8 bits (41), Expect = 3e-16
Identities = 56/61 (91%)
Strand = Plus / Plus
Query: 1 gttactaatcattccaatctgccactgcaaatattaatcatttgacttttggtcctaatt 60
|||||||||| ||||||| |||| ||||||||||||||||||||||||||| || |||||
Sbjct: 27 gttactaatccttccaatatgcccctgcaaatattaatcatttgacttttgatcataatt 86
Query: 61 a 61
|
Sbjct: 87 a 87
Score = 56.0 bits (28), Expect = 1e-08
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 226 tcaaatgattaatatttgcagtggcagattggaaggattagtaa 269
||||||||||||||||| | | ||||||||| ||||||||||||
Sbjct: 251 tcaaatgattaatatttacgggggcagattgaaaggattagtaa 294
Score = 48.1 bits (24), Expect = 4e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 173 catttgaattttcatccctaaagttactaatc 204
||||||||||||| ||||| ||||||||||||
Sbjct: 5 catttgaattttcgtccctgaagttactaatc 36
Score = 42.1 bits (21), Expect = 2e-04
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 172 tcatttgaattttcatccctaaagttactaatc 204
||||||||||||| ||||| ||||||||||||
Sbjct: 318 tcatttgaattttagtccctgaagttactaatc 286
>40906_mtr-MIR2632a:mirbase
Length = 187
Score = 105 bits (53), Expect = 2e-23
Identities = 59/61 (96%)
Strand = Plus / Plus
Query: 1 gttactaatcattccaatctgccactgcaaatattaatcatttgacttttggtcctaatt 60
|||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 27 gttactaatccttccaatctgcccctgcaaatattaatcatttgacttttggtcctaatt 86
Query: 61 a 61
|
Sbjct: 87 a 87
Score = 105 bits (53), Expect = 2e-23
Identities = 71/77 (92%)
Strand = Plus / Minus
Query: 193 aagttactaatcagatgtaattaggactatttttcaaatgattaatatttgcagtggcag 252
||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||
Sbjct: 104 aagttactaatcagatgtaattaggaccaaaagtcaaatgattaatatttgcaggggcag 45
Query: 253 attggaaggattagtaa 269
|||||||||||||||||
Sbjct: 44 attggaaggattagtaa 28
Score = 91.7 bits (46), Expect = 3e-19
Identities = 55/58 (94%)
Strand = Plus / Minus
Query: 1 gttactaatcattccaatctgccactgcaaatattaatcatttgacttttggtcctaa 58
|||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 160 gttactaatccttccaatctgcccttgcaaatattaatcatttgacttttggtcctaa 103
Score = 71.9 bits (36), Expect = 2e-13
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 226 tcaaatgattaatatttgcagtggcagattggaaggattagtaa 269
|||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 116 tcaaatgattaatatttgcaagggcagattggaaggattagtaa 159
Score = 58.0 bits (29), Expect = 4e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 172 tcatttgaattttcatccctaaagttactaatc 204
|||||||||||||||||||| ||||||||||||
Sbjct: 4 tcatttgaattttcatccctgaagttactaatc 36
Score = 40.1 bits (20), Expect = 9e-04
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 173 catttgaattttcatccctaaagttactaatc 204
||||||||||||| || || ||||||||||||
Sbjct: 182 catttgaattttcgtcgctgaagttactaatc 151
>40907_mtr-MIR2632b:mirbase
Length = 194
Score = 89.7 bits (45), Expect = 1e-18
Identities = 51/53 (96%)
Strand = Plus / Plus
Query: 1 gttactaatcattccaatctgccactgcaaatattaatcatttgacttttggt 53
|||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct: 27 gttactaatccttccaatctgcccctgcaaatattaatcatttgacttttggt 79
Score = 79.8 bits (40), Expect = 1e-15
Identities = 43/44 (97%)
Strand = Plus / Minus
Query: 226 tcaaatgattaatatttgcagtggcagattggaaggattagtaa 269
||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 71 tcaaatgattaatatttgcaggggcagattggaaggattagtaa 28
Score = 75.8 bits (38), Expect = 2e-14
Identities = 57/62 (91%), Gaps = 1/62 (1%)
Strand = Plus / Minus
Query: 1 gttactaatcattccaatctgccactgcaaatattaatcatttgacttttggtcctaatt 60
|||||||||| ||| |||||||| ||||||||||||||||||| |||||||||| |||||
Sbjct: 167 gttactaatccttctaatctgcc-ctgcaaatattaatcatttaacttttggtcataatt 109
Query: 61 ag 62
||
Sbjct: 108 ag 107
Score = 60.0 bits (30), Expect = 9e-10
Identities = 40/42 (95%), Gaps = 1/42 (2%)
Strand = Plus / Plus
Query: 228 aaatgattaatatttgcagtggcagattggaaggattagtaa 269
||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 126 aaatgattaatatttgcag-ggcagattagaaggattagtaa 166
Score = 58.0 bits (29), Expect = 4e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 172 tcatttgaattttcatccctaaagttactaatc 204
|||||||||||||||||||| ||||||||||||
Sbjct: 4 tcatttgaattttcatccctgaagttactaatc 36
Score = 42.1 bits (21), Expect = 2e-04
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 172 tcatttgaattttcatccctaaagttactaatc 204
|||||||||||||| || || ||||||||||||
Sbjct: 190 tcatttgaattttcgtctctgaagttactaatc 158
