miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>40914_mtr-MIR2638a:mirbase
Length = 269
Score = 478 bits (241), Expect = e-135
Identities = 259/268 (96%)
Strand = Plus / Minus
Query: 2 ttactaatccttccaatctgccactgcaaatattaatcatttgaaaaatagtcctaatta 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 ttactaatccttccaatctgccactgcaaatattaatcatttgaaaaatagtcctaatta 210
Query: 62 catctgattagtaactttagggatgaaaattcaaatgatatatatttgcagggacaaaag 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 catctgattagtaactttagggatgaaaattcaaatgatatatatttgcagggacaaaag 150
Query: 122 acctatttaagccaaccacctcgtccaatcatcacttgccacataggcaccacgtcgcta 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 acctatttaagccaaccacctcgtccaatcatcacttgccacataggcaccacgtcgcta 90
Query: 182 atgatagcccatctcagcnnnnnnnnnctaattaggaccaaaagtcaaatgattaatatt 241
|||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 89 atgatagcccatctcagcaaaaaaaaactaattaggaccaaaagtcaaatgattaatatt 30
Query: 242 tgcagtggcagattggaatgattagtaa 269
||||||||||||||||||||||||||||
Sbjct: 29 tgcagtggcagattggaatgattagtaa 2
Score = 81.8 bits (41), Expect = 3e-16
Identities = 44/45 (97%)
Strand = Plus / Plus
Query: 1 gttactaatccttccaatctgccactgcaaatattaatcatttga 45
|||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1 gttactaatcattccaatctgccactgcaaatattaatcatttga 45
Score = 79.8 bits (40), Expect = 1e-15
Identities = 43/44 (97%)
Strand = Plus / Plus
Query: 226 tcaaatgattaatatttgcagtggcagattggaatgattagtaa 269
|||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 226 tcaaatgattaatatttgcagtggcagattggaaggattagtaa 269
>40908_mtr-MIR2632c:mirbase
Length = 322
Score = 226 bits (114), Expect = 7e-60
Identities = 229/269 (85%), Gaps = 1/269 (0%)
Strand = Plus / Plus
Query: 1 gttactaatccttccaatctgccactgcaaatattaatcatttgaaaaatagtcctaatt 60
|||||||||||||||||| |||| ||||||||||||||||||||| | || |||||
Sbjct: 27 gttactaatccttccaatatgcccctgcaaatattaatcatttgacttttgatcataatt 86
Query: 61 acatctgattagtaactttagggatgaaaattcaaatgatatatatttgcagggacaaaa 120
|||||||||||||||||| || ||||||||||||| ||| |||||||| ||||| |||
Sbjct: 87 acatctgattagtaacttcagtgatgaaaattcaagtgacctatatttggagggatgaaa 146
Query: 121 gacctatttaagccaaccacctcgtccaatcatcacttgccacataggcaccacgtcgct 180
||||||||||||| |||||||| | |||||||||||||||||||| ||||||||||||||
Sbjct: 147 gacctatttaagcaaaccacctagcccaatcatcacttgccacatgggcaccacgtcgct 206
Query: 181 aatgatagcccatctcagcnnnnnnnnnctaattaggaccaaaagtcaaatgattaatat 240
||||| | |||| |||| | |||||||||| |||||||||||||||||||||
Sbjct: 207 aatgacaacccacctca-ccaaaaaaacctaattaggagcaaaagtcaaatgattaatat 265
Query: 241 ttgcagtggcagattggaatgattagtaa 269
|| | | ||||||||| || |||||||||
Sbjct: 266 ttacgggggcagattgaaaggattagtaa 294
Score = 79.8 bits (40), Expect = 1e-15
Identities = 55/60 (91%)
Strand = Plus / Minus
Query: 210 taattaggaccaaaagtcaaatgattaatatttgcagtggcagattggaatgattagtaa 269
|||||| || ||||||||||||||||||||||||||| |||| ||||||| |||||||||
Sbjct: 87 taattatgatcaaaagtcaaatgattaatatttgcaggggcatattggaaggattagtaa 28
Score = 58.0 bits (29), Expect = 4e-09
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 1 gttactaatccttccaatctgccactgcaaatattaatcatttga 45
||||||||||||| ||||||||| | | |||||||||||||||||
Sbjct: 295 gttactaatcctttcaatctgcccccgtaaatattaatcatttga 251
Score = 48.1 bits (24), Expect = 4e-06
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 67 gattagtaactttagggatgaaaattcaaatg 98
|||||||||||| ||||| |||||||||||||
Sbjct: 36 gattagtaacttcagggacgaaaattcaaatg 5
Score = 42.1 bits (21), Expect = 2e-04
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 67 gattagtaactttagggatgaaaattcaaatga 99
|||||||||||| ||||| |||||||||||||
Sbjct: 286 gattagtaacttcagggactaaaattcaaatga 318
>40906_mtr-MIR2632a:mirbase
Length = 187
Score = 107 bits (54), Expect = 4e-24
Identities = 72/78 (92%)
Strand = Plus / Plus
Query: 1 gttactaatccttccaatctgccactgcaaatattaatcatttgaaaaatagtcctaatt 60
||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||
Sbjct: 27 gttactaatccttccaatctgcccctgcaaatattaatcatttgacttttggtcctaatt 86
Query: 61 acatctgattagtaactt 78
||||||||||||||||||
Sbjct: 87 acatctgattagtaactt 104
Score = 103 bits (52), Expect = 7e-23
Identities = 58/60 (96%)
Strand = Plus / Minus
Query: 210 taattaggaccaaaagtcaaatgattaatatttgcagtggcagattggaatgattagtaa 269
||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct: 87 taattaggaccaaaagtcaaatgattaatatttgcaggggcagattggaaggattagtaa 28
Score = 89.7 bits (45), Expect = 1e-18
Identities = 54/57 (94%)
Strand = Plus / Plus
Query: 213 ttaggaccaaaagtcaaatgattaatatttgcagtggcagattggaatgattagtaa 269
||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct: 103 ttaggaccaaaagtcaaatgattaatatttgcaagggcagattggaaggattagtaa 159
Score = 73.8 bits (37), Expect = 6e-14
Identities = 43/45 (95%)
Strand = Plus / Minus
Query: 1 gttactaatccttccaatctgccactgcaaatattaatcatttga 45
||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 160 gttactaatccttccaatctgcccttgcaaatattaatcatttga 116
Score = 58.0 bits (29), Expect = 4e-09
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 67 gattagtaactttagggatgaaaattcaaatga 99
|||||||||||| ||||||||||||||||||||
Sbjct: 36 gattagtaacttcagggatgaaaattcaaatga 4
Score = 40.1 bits (20), Expect = 9e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 67 gattagtaactttagggatgaaaattcaaatg 98
|||||||||||| || || |||||||||||||
Sbjct: 151 gattagtaacttcagcgacgaaaattcaaatg 182
>40907_mtr-MIR2632b:mirbase
Length = 194
Score = 87.7 bits (44), Expect = 4e-18
Identities = 50/52 (96%)
Strand = Plus / Minus
Query: 218 accaaaagtcaaatgattaatatttgcagtggcagattggaatgattagtaa 269
||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct: 79 accaaaagtcaaatgattaatatttgcaggggcagattggaaggattagtaa 28
Score = 81.8 bits (41), Expect = 3e-16
Identities = 44/45 (97%)
Strand = Plus / Plus
Query: 1 gttactaatccttccaatctgccactgcaaatattaatcatttga 45
||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 27 gttactaatccttccaatctgcccctgcaaatattaatcatttga 71
Score = 73.8 bits (37), Expect = 6e-14
Identities = 56/61 (91%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 209 ctaattaggaccaaaagtcaaatgattaatatttgcagtggcagattggaatgattagta 268
||||||| |||||||||| ||||||||||||||||||| |||||||| ||| ||||||||
Sbjct: 107 ctaattatgaccaaaagttaaatgattaatatttgcag-ggcagattagaaggattagta 165
Query: 269 a 269
|
Sbjct: 166 a 166
Score = 61.9 bits (31), Expect = 2e-10
Identities = 41/43 (95%), Gaps = 1/43 (2%)
Strand = Plus / Minus
Query: 1 gttactaatccttccaatctgccactgcaaatattaatcattt 43
|||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 167 gttactaatccttctaatctgcc-ctgcaaatattaatcattt 126
Score = 58.0 bits (29), Expect = 4e-09
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 67 gattagtaactttagggatgaaaattcaaatga 99
|||||||||||| ||||||||||||||||||||
Sbjct: 36 gattagtaacttcagggatgaaaattcaaatga 4
Score = 42.1 bits (21), Expect = 2e-04
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 67 gattagtaactttagggatgaaaattcaaatga 99
|||||||||||| || || ||||||||||||||
Sbjct: 158 gattagtaacttcagagacgaaaattcaaatga 190
