miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>40935_mtr-MIR2652b:mirbase
Length = 235
Score = 258 bits (130), Expect = 2e-69
Identities = 200/222 (90%), Gaps = 1/222 (0%)
Strand = Plus / Plus
Query: 8 gtgcataaggaaatccttatgcact-tgcataaatctaaaaatggttttggagtgtaact 66
||||||||||||||| |||||||| |||||||||| | ||||||||||||||| ||||
Sbjct: 10 gtgcataaggaaatctttatgcaccctgcataaatccagaaatggttttggagtacaact 69
Query: 67 cacatagaccattttcacatcaaaatagttttggcataattgggttgggatttatgcagg 126
|||| | ||||||| ||||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 70 cacagaaaccatttccacatcaaaatgattttggcataattgggctgggatttatgcaga 129
Query: 127 gtgctggaaaccattaaatacatctaatgattttggagtacaattcactaaaaccattta 186
||||||||||||||||| ||||||||||||||||| ||||| | |||| ||||||||||
Sbjct: 130 gtgctggaaaccattaagtacatctaatgattttgtagtacgactcacaaaaaccatttt 189
Query: 187 tagatttatgcagggtgcataaggatttccttatgcaccata 228
| |||||||||||||||||||||||||||||||||||||||
Sbjct: 190 tgaatttatgcagggtgcataaggatttccttatgcaccata 231
Score = 81.8 bits (41), Expect = 2e-16
Identities = 50/53 (94%)
Strand = Plus / Minus
Query: 176 aaaaccatttatagatttatgcagggtgcataaggatttccttatgcaccata 228
|||||||||| | |||||||||||||||||||| |||||||||||||||||||
Sbjct: 58 aaaaccatttctggatttatgcagggtgcataaagatttccttatgcaccata 6
Score = 58.0 bits (29), Expect = 3e-09
Identities = 45/49 (91%), Gaps = 1/49 (2%)
Strand = Plus / Minus
Query: 8 gtgcataaggaaatccttatgca-cttgcataaatctaaaaatggtttt 55
||||||||||||||||||||||| | ||||||||| ||||||||||||
Sbjct: 227 gtgcataaggaaatccttatgcaccctgcataaattcaaaaatggtttt 179
>40942_mtr-MIR2652i:mirbase
Length = 235
Score = 250 bits (126), Expect = 4e-67
Identities = 199/222 (89%), Gaps = 1/222 (0%)
Strand = Plus / Plus
Query: 8 gtgcataaggaaatccttatgcact-tgcataaatctaaaaatggttttggagtgtaact 66
||||||||| |||||||||||||| |||||||||| | ||||||||||||||| ||||
Sbjct: 10 gtgcataagaaaatccttatgcaccctgcataaatccagaaatggttttggagtacaact 69
Query: 67 cacatagaccattttcacatcaaaatagttttggcataattgggttgggatttatgcagg 126
|||| | ||||||| |||| ||||| ||||||||||||||||||||||||||||||| |
Sbjct: 70 cacagaaaccatttccacagtaaaatggttttggcataattgggttgggatttatgcaag 129
Query: 127 gtgctggaaaccattaaatacatctaatgattttggagtacaattcactaaaaccattta 186
|||||||||| |||||| ||||||||||| ||||| ||||||| |||| ||||||||||
Sbjct: 130 gtgctggaaatcattaagtacatctaatggttttgaagtacaactcacaaaaaccatttc 189
Query: 187 tagatttatgcagggtgcataaggatttccttatgcaccata 228
| |||||||||||||||||||||||||||||||||||||||
Sbjct: 190 tgaatttatgcagggtgcataaggatttccttatgcaccata 231
Score = 81.8 bits (41), Expect = 2e-16
Identities = 50/53 (94%)
Strand = Plus / Minus
Query: 176 aaaaccatttatagatttatgcagggtgcataaggatttccttatgcaccata 228
|||||||||| | |||||||||||||||||||||||||| |||||||||||||
Sbjct: 58 aaaaccatttctggatttatgcagggtgcataaggattttcttatgcaccata 6
Score = 50.1 bits (25), Expect = 8e-07
Identities = 44/49 (89%), Gaps = 1/49 (2%)
Strand = Plus / Minus
Query: 8 gtgcataaggaaatccttatgca-cttgcataaatctaaaaatggtttt 55
||||||||||||||||||||||| | ||||||||| | ||||||||||
Sbjct: 227 gtgcataaggaaatccttatgcaccctgcataaattcagaaatggtttt 179
>40940_mtr-MIR2652g:mirbase
Length = 234
Score = 220 bits (111), Expect = 4e-58
Identities = 193/219 (88%), Gaps = 1/219 (0%)
Strand = Plus / Minus
Query: 8 gtgcataaggaaatccttatgcact-tgcataaatctaaaaatggttttggagtgtaact 66
||||||||| |||||||||||||| ||||||||| || ||||||||||||||| |||||
Sbjct: 226 gtgcataagaaaatccttatgcaccctgcataaatttagaaatggttttggagtataact 167
Query: 67 cacatagaccattttcacatcaaaatagttttggcataattgggttgggatttatgcagg 126
|||| | ||||||| || | |||||| ||||| ||||||||||| ||| ||||||||||
Sbjct: 166 cacagaaaccatttccatagcaaaatggttttagcataattgggctggaatttatgcaga 107
Query: 127 gtgctggaaaccattaaatacatctaatgattttggagtacaattcactaaaaccattta 186
||||||||||||||||| ||||||||||| |||||||||||| |||| ||| |||||
Sbjct: 106 gtgctggaaaccattaattacatctaatggttttggagtacagctcacagaaatcatttc 47
Query: 187 tagatttatgcagggtgcataaggatttccttatgcacc 225
| ||||||||||||||||||||| |||||||||||||||
Sbjct: 46 tggatttatgcagggtgcataagaatttccttatgcacc 8
Score = 81.8 bits (41), Expect = 2e-16
Identities = 50/53 (94%)
Strand = Plus / Plus
Query: 176 aaaaccatttatagatttatgcagggtgcataaggatttccttatgcaccata 228
|||||||||| || ||||||||||||||||||||||||| |||||||||||||
Sbjct: 178 aaaaccatttctaaatttatgcagggtgcataaggattttcttatgcaccata 230
Score = 46.1 bits (23), Expect = 1e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 ggttaccgtgcataaggaaatccttatgcac 31
|||||| |||||||||||||| |||||||||
Sbjct: 2 ggttacggtgcataaggaaattcttatgcac 32
>40945_mtr-MIR2652l:mirbase
Length = 225
Score = 202 bits (102), Expect = 9e-53
Identities = 191/221 (86%), Gaps = 11/221 (4%)
Strand = Plus / Plus
Query: 9 tgcataaggaaatccttatgcact-tgcataaatctaaaaatggttttggagtgtaactc 67
|||||||||||||| ||||||||| |||||||||||| ||||||||||||||| |||||
Sbjct: 11 tgcataaggaaatctttatgcactctgcataaatctagaaatggttttggagtacaactc 70
Query: 68 acatagaccattttcacatcaaaatagttttggcataattgggttgggatttatgcaggg 127
|| | |||||||| | | |||||| |||||||||||||| ||||||||||
Sbjct: 71 acgaaaaccatttttatagcaaaatggttttggcataatt----------ttatgcaggg 120
Query: 128 tgctggaaaccattaaatacatctaatgattttggagtacaattcactaaaaccatttat 187
|||||||||||||||| || |||||||| ||||||||||||| |||| ||||||||| |
Sbjct: 121 tgctggaaaccattaagtatatctaatggttttggagtacaactcacagaaaccatttct 180
Query: 188 agatttatgcagggtgcataaggatttccttatgcaccata 228
||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggatttatgcagggtgcataaggatttccttatgcaccata 221
Score = 73.8 bits (37), Expect = 5e-14
Identities = 49/53 (92%)
Strand = Plus / Minus
Query: 176 aaaaccatttatagatttatgcagggtgcataaggatttccttatgcaccata 228
|||||||||| ||||||||||||| |||||||| |||||||||||||| ||||
Sbjct: 58 aaaaccatttctagatttatgcagagtgcataaagatttccttatgcatcata 6
Score = 56.0 bits (28), Expect = 1e-08
Identities = 44/48 (91%), Gaps = 1/48 (2%)
Strand = Plus / Minus
Query: 8 gtgcataaggaaatccttatgca-cttgcataaatctaaaaatggttt 54
||||||||||||||||||||||| | |||||||||| | |||||||||
Sbjct: 217 gtgcataaggaaatccttatgcaccctgcataaatccagaaatggttt 170
>40934_mtr-MIR2652a:mirbase
Length = 247
Score = 165 bits (83), Expect = 2e-41
Identities = 104/111 (93%)
Strand = Plus / Plus
Query: 118 ttatgcagggtgctggaaaccattaaatacatctaatgattttggagtacaattcactaa 177
|||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||| |
Sbjct: 133 ttatgcagggtgctggaaaccattaagtacatctaatggttttggagtacaactcacaga 192
Query: 178 aaccatttatagatttatgcagggtgcataaggatttccttatgcaccata 228
|||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 aaccatttctggatttatgcagggtgcataaggatttccttatgcaccata 243
Score = 81.8 bits (41), Expect = 2e-16
Identities = 50/53 (94%)
Strand = Plus / Minus
Query: 176 aaaaccatttatagatttatgcagggtgcataaggatttccttatgcaccata 228
||||| |||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct: 58 aaaactatttatggatttatgcagggtgcataagaatttccttatgcaccata 6
Score = 56.0 bits (28), Expect = 1e-08
Identities = 44/48 (91%), Gaps = 1/48 (2%)
Strand = Plus / Minus
Query: 8 gtgcataaggaaatccttatgca-cttgcataaatctaaaaatggttt 54
||||||||||||||||||||||| | |||||||||| | |||||||||
Sbjct: 239 gtgcataaggaaatccttatgcaccctgcataaatccagaaatggttt 192
>40938_mtr-MIR2652e:mirbase
Length = 247
Score = 149 bits (75), Expect = 1e-36
Identities = 196/234 (83%), Gaps = 13/234 (5%)
Strand = Plus / Plus
Query: 8 gtgcataaggaaatccttatgcact-tgcataaatctaaaaatggttttggagtgtaact 66
|||||||||||||||||||||||| |||||||||| | ||||| ||||||||| ||||
Sbjct: 10 gtgcataaggaaatccttatgcaccctgcataaatccagaaatgattttggagtacaact 69
Query: 67 cacatagaccattttcacatcaaaatagttttggcataatt-------gggt--tgggat 117
|||||| | ||||| |||| |||||| |||||| ||||||| |||| ||| |
Sbjct: 70 cacataaatcatttccacagcaaaatggttttgacataattttatgcagggtgctggaaa 129
Query: 118 t---tatgcagggtgctggaaaccattaaatacatctaatgattttggagtacaattcac 174
| |||||| ||||||| ||||||| || ||||||||||| ||||| ||||||| ||||
Sbjct: 130 tccttatgcatggtgctgaaaaccatgaagtacatctaatggttttgaagtacaactcac 189
Query: 175 taaaaccatttatagatttatgcagggtgcataaggatttccttatgcaccata 228
||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct: 190 agaaaccatttctagatttatgcagggtgcataaggattttcttatgcaccata 243
Score = 81.8 bits (41), Expect = 2e-16
Identities = 50/53 (94%)
Strand = Plus / Minus
Query: 176 aaaaccatttatagatttatgcagggtgcataaggatttccttatgcaccata 228
|||| ||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 58 aaaatcatttctggatttatgcagggtgcataaggatttccttatgcaccata 6
Score = 56.0 bits (28), Expect = 1e-08
Identities = 44/48 (91%), Gaps = 1/48 (2%)
Strand = Plus / Minus
Query: 8 gtgcataaggaaatccttatgca-cttgcataaatctaaaaatggttt 54
||||||||| ||||||||||||| | |||||||||||| |||||||||
Sbjct: 239 gtgcataagaaaatccttatgcaccctgcataaatctagaaatggttt 192
>40943_mtr-MIR2652j:mirbase
Length = 226
Score = 133 bits (67), Expect = 7e-32
Identities = 97/107 (90%)
Strand = Plus / Plus
Query: 117 tttatgcagggtgctggaaaccattaaatacatctaatgattttggagtacaattcacta 176
|||||||||||||||| |||| ||||| ||||||||||||||||| | ||||| |||| |
Sbjct: 111 tttatgcagggtgctgtaaactattaagtacatctaatgattttgaaatacaactcacaa 170
Query: 177 aaaccatttatagatttatgcagggtgcataaggatttccttatgca 223
||| ||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 171 aaatcatttctggatttatgcagggtgcataaggatttccttatgca 217
Score = 54.0 bits (27), Expect = 5e-08
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 176 aaaaccatttatagatttatgcagggtgcataaggattt 214
|||||||||| | ||||||||||| ||||||||||||||
Sbjct: 61 aaaaccatttctggatttatgcagagtgcataaggattt 23
Score = 48.1 bits (24), Expect = 3e-06
Identities = 43/48 (89%), Gaps = 1/48 (2%)
Strand = Plus / Minus
Query: 9 tgcataaggaaatccttatgca-cttgcataaatctaaaaatggtttt 55
|||||||||||||||||||||| | |||||||||| | ||||| ||||
Sbjct: 217 tgcataaggaaatccttatgcaccctgcataaatccagaaatgatttt 170
>40941_mtr-MIR2652h:mirbase
Length = 248
Score = 133 bits (67), Expect = 7e-32
Identities = 101/111 (90%), Gaps = 1/111 (0%)
Strand = Plus / Plus
Query: 118 ttatgcagggtgctggaaaccattaaatacatctaatgattttggagtacaattcactaa 177
|||||||||||||||||||||||||| ||||||||||| ||||| ||||||| |||| |
Sbjct: 134 ttatgcagggtgctggaaaccattaagtacatctaatggttttgaagtacaactcacaga 193
Query: 178 aaccatttatagatttatgcagggtgcataaggatttccttatgcaccata 228
|||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 194 aaccatttccggatttatgcagggtgcataagga-ttccttatgcaccata 243
Score = 61.9 bits (31), Expect = 2e-10
Identities = 37/39 (94%)
Strand = Plus / Minus
Query: 190 atttatgcagggtgcataaggatttccttatgcaccata 228
||||||||||||||||||| ||||||||||| |||||||
Sbjct: 45 atttatgcagggtgcataaagatttccttatacaccata 7
>40939_mtr-MIR2652f:mirbase
Length = 186
Score = 83.8 bits (42), Expect = 5e-17
Identities = 76/86 (88%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 45 aaaatggttttggagtgtaactcacatagaccattttcacatcaaaatagttttggcata 104
||||||||||| |||| |||||||| | || |||||||| ||||||||||||||||||
Sbjct: 91 aaaatggttttagagtccaactcacaaaaactattttcactgcaaaatagttttggcata 150
Query: 105 attgggttgggatttatgcagggtgc 130
| |||| |||||||||||||||||||
Sbjct: 151 a-tgggctgggatttatgcagggtgc 175
Score = 71.9 bits (36), Expect = 2e-13
Identities = 48/52 (92%)
Strand = Plus / Plus
Query: 134 aaaccattaaatacatctaatgattttggagtacaattcactaaaaccattt 185
|||||||||| ||||||||||||||||||||||||| |||| |||||||||
Sbjct: 32 aaaccattaagtacatctaatgattttggagtacaactcacagaaaccattt 83
Score = 50.1 bits (25), Expect = 8e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 189 gatttatgcagggtgcataaggatt 213
|||||||||||||||||||||||||
Sbjct: 160 gatttatgcagggtgcataaggatt 184
>40937_mtr-MIR2652d:mirbase
Length = 227
Score = 83.8 bits (42), Expect = 5e-17
Identities = 57/62 (91%)
Strand = Plus / Minus
Query: 163 agtacaattcactaaaaccatttatagatttatgcagggtgcataaggatttccttatgc 222
||||||| |||| ||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 71 agtacaactcacataaaccatttctggatttatgcagggtgcataaggatttccttatgc 12
Query: 223 ac 224
||
Sbjct: 11 ac 10
Score = 65.9 bits (33), Expect = 1e-11
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 176 aaaaccatttatagatttatgcagggtgcataaggatttccttatgcaccata 228
|||||||||| | |||||||||||||||||||||||||| |||| |||||||
Sbjct: 171 aaaaccatttctgaatttatgcagggtgcataaggatttcgttatacaccata 223
Score = 58.0 bits (29), Expect = 3e-09
Identities = 81/97 (83%), Gaps = 1/97 (1%)
Strand = Plus / Minus
Query: 12 ataaggaaatccttatgcact-tgcataaatctaaaaatggttttggagtgtaactcaca 70
|||| ||||||||||||||| ||||||||| | ||||||||||||||| |||| |||
Sbjct: 215 ataacgaaatccttatgcaccctgcataaattcagaaatggttttggagtacaacttaca 156
Query: 71 tagaccattttcacatcaaaatagttttggcataatt 107
| ||||||||| || ||||| ||||| ||||||||
Sbjct: 155 aaaaccattttcccaataaaatggtttttgcataatt 119
Score = 56.0 bits (28), Expect = 1e-08
Identities = 44/48 (91%), Gaps = 1/48 (2%)
Strand = Plus / Plus
Query: 8 gtgcataaggaaatccttatgca-cttgcataaatctaaaaatggttt 54
||||||||||||||||||||||| | |||||||||| | |||||||||
Sbjct: 10 gtgcataaggaaatccttatgcaccctgcataaatccagaaatggttt 57
>40936_mtr-MIR2652c:mirbase
Length = 227
Score = 83.8 bits (42), Expect = 5e-17
Identities = 57/62 (91%)
Strand = Plus / Plus
Query: 163 agtacaattcactaaaaccatttatagatttatgcagggtgcataaggatttccttatgc 222
||||||| |||| ||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 158 agtacaactcacataaaccatttctggatttatgcagggtgcataaggatttccttatgc 217
Query: 223 ac 224
||
Sbjct: 218 ac 219
Score = 65.9 bits (33), Expect = 1e-11
Identities = 48/53 (90%)
Strand = Plus / Minus
Query: 176 aaaaccatttatagatttatgcagggtgcataaggatttccttatgcaccata 228
|||||||||| | |||||||||||||||||||||||||| |||| |||||||
Sbjct: 58 aaaaccatttctgaatttatgcagggtgcataaggatttcgttatacaccata 6
Score = 58.0 bits (29), Expect = 3e-09
Identities = 81/97 (83%), Gaps = 1/97 (1%)
Strand = Plus / Plus
Query: 12 ataaggaaatccttatgcact-tgcataaatctaaaaatggttttggagtgtaactcaca 70
|||| ||||||||||||||| ||||||||| | ||||||||||||||| |||| |||
Sbjct: 14 ataacgaaatccttatgcaccctgcataaattcagaaatggttttggagtacaacttaca 73
Query: 71 tagaccattttcacatcaaaatagttttggcataatt 107
| ||||||||| || ||||| ||||| ||||||||
Sbjct: 74 aaaaccattttcccaataaaatggtttttgcataatt 110
Score = 56.0 bits (28), Expect = 1e-08
Identities = 44/48 (91%), Gaps = 1/48 (2%)
Strand = Plus / Minus
Query: 8 gtgcataaggaaatccttatgca-cttgcataaatctaaaaatggttt 54
||||||||||||||||||||||| | |||||||||| | |||||||||
Sbjct: 219 gtgcataaggaaatccttatgcaccctgcataaatccagaaatggttt 172
